Gene omics information

Query gene ID Zm.1390.1.A1_at
Gene name
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.7188.2Zm.1390.1.A1_atAY106966.1--3e-3At3g212304CL5 (4-coumarate:CoA ligase 5)S.X.H.G.
0.4455.7ZmAffx.294.1.S1_atAI670427--3e+0At3g4459060S acidic ribosomal protein P2 (RPP2D)S.X.H.G.
0.2928.1Zm.13911.1.S1_atAY109626.1potassium channel protein ZMK2-6e-3At4g18290KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)S.X.H.G.
0.104.6ZmAffx.31.1.S1_atAI657417--8e-1At3g55880unknown proteinS.X.H.G.
0.062.3Zm.6672.1.S1_atCF636709Blue copper protein-4e-1At1g72230plastocyanin-like domain-containing proteinS.X.H.G.
0.031.1Zm.6302.1.A1_atCO533765hypothetical protein LOC100192816-4e-1At2g03090ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.098.0GSM206301Upper pulvinus 5 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
7.597.8GSM206325Upper pulvinus 5 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinus
5.897.2GSM206303Upper pulvinus 30 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
5.897.2GSM206309Lower pulvinus 30 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
5.096.7GSM206328Upper pulvinus 60 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinus
4.996.7GSM206331Lower pulvinus 5 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinus
4.696.4GSM206334Lower pulvinus 60 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinus
4.596.3GSM206329Right pulvinus control polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinus
4.296.0GSM206310Lower pulvinus 60 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
4.195.9GSM206308Lower pulvinus 15 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.460726Zm.3406.1.S1_atAY566301.14-coumarate coenzyme A ligase-7e-2At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.081e-344Zm.11845.1.A1_atCO532590--3e-1At1g650604CL3C.G.S.X.
0.012e-240Zm.12355.1.S1_atCO520111hypothetical protein LOC100280053-2e-4At1g77390CYCA1C.G.S.X.
0.012e-240Zm.1074.1.A1_atCF631708--1e+0At1g62940ACOS5 (ACYL-COA SYNTHETASE 5)C.G.S.X.
0.047e-238Zm.18403.1.A1_atBM072852hypothetical protein LOC100274307-5e-3At5g381204-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family proteinC.G.S.X.
0.013e-136Zm.5679.1.S1_atCD437138hypothetical protein LOC100216885-3e-3At2g43950OEP37C.G.S.X.
0.021e+034Zm.7293.1.S1_atBI675120--6e+0At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)C.G.S.X.
0.011e+034Zm.3489.1.A1_atAW433407--2e+0At5g29613unknown proteinC.G.S.X.
0.021e+034Zm.11770.1.A1_atBM380607hypothetical protein LOC100191551-9e-5At5g12010unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.083e-344Arabidopsis thalianaAt3g212308216774CL5 (4-coumarate:CoA ligase 5)The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo.---C.G.S.X.
0.122e-1791Glycine maxGma.4928.1.S1_a_atAF002259.14-coumarate:CoA ligase isoenzyme 2-4e-9At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.590926Hordeum vulgareContig4674_atContig4674--5e-2At1g516804CL1 (4-COUMARATE:COA LIGASE 1)C.G.S.X.
0.520922Oryza sativaOs06g0656500AK068985.1--2e-2At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.126e-859Populus trichocarpaPtpAffx.12056.3.S1_a_atCV2594944-Coumarate:CoA ligase-5e-22At1g650604CL3C.G.S.X.
0.542e-170599Triticum aestivumTaAffx.30205.2.S1_s_atCA627137--1e-4At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
0.227e-32137Vitis vinifera1609307_atCD715818hypothetical protein LOC100254698-3e-16At3g212404CL2 (4-COUMARATE:COA LIGASE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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