Gene omics information

Query gene ID	Zm.13855.1.A1_at
Gene name	glycine cleavage complex T-protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.33	36.0	Zm.13855.1.A1_at	AF439731.1	glycine cleavage complex T-protein	-	7e-47	At1g11860	aminomethyltransferase, putative	S.X.	H.G.	Please select
0.80	94.0	Zm.18085.1.S1_at	CK986038	hypothetical protein LOC100274126	-	5e-11	At5g13800	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.9649.1.A1_at	BM337167	hypothetical protein LOC100277264	-	1e+0	At1g43720	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.18460.1.S1_at	CO521354	hypothetical protein LOC100216873	-	8e-3	At1g60430	ARPC3 (actin-related protein C3)	S.X.	H.G.	Please select
0.47	59.9	Zm.2234.3.A1_a_at	CO526105	hypothetical protein LOC100273895	-	9e-9	At4g17180	glycosyl hydrolase family 17 protein	S.X.	H.G.	Please select
0.40	48.5	Zm.13712.1.S1_at	AY106534.1	-	-	4e+0	At2g46640	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.7	99.7	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.4	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2389	Zm.13855.1.S1_at	AF439731.1	glycine cleavage complex T-protein	-	7e-47	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select
0.05	7e-5	48	Zm.4867.1.A1_at	CO529638	hypothetical protein LOC100279332	-	6e-6	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.7068.2.S1_at	CD960009	-	-	3e-2	At1g24120	ARL1 (ARG1-LIKE 1)	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.6063.1.A1_a_at	CD998449	vacuolar proton pump homolog1	-	0	At1g15690	AVP1	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.2407.1.A1_a_at	BM073394	hypothetical protein LOC100191492	-	6e+0	At5g19370	rhodanese-like domain-containing protein / PPIC-type PPIASE domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.1374.1.S1_at	40794996-162	-	-	0	Atmg00270	-	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.1169.1.A1_at	AW681259	-	-	3e+0	At4g36540	BEE2 (BR Enhanced Expression 2)	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.1169.1.S1_at	AW681259	hypothetical protein LOC100280320	-	3e+0	At4g36540	BEE2 (BR Enhanced Expression 2)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.9068.1.A1_at	BM337511	-	-	1e+0	At4g21620	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	7e-47	188	Arabidopsis thaliana	At1g11860	837733	aminomethyltransferase, putative	F:aminomethyltransferase activity;P:response to cadmium ion;C:in 6 components;OBMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	1e-67	258	Glycine max	Gma.2009.1.S1_at	CD391868	-	-	9e-50	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select
0.04	1e+0	34	Hordeum vulgare	rbaal11b02_x_at	rbaal11b02	-	-	9e-3	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select
0.07	5e-9	63	Oryza sativa	Os04g0623800	AK099234.1	-	Aminomethyltransferase, mitochondrial precursor(EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT)	2e-4	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.46	8e-69	262	Populus trichocarpa	Ptp.6429.1.S1_s_at	CN520890	precursor of carboxylase t-protein 2, glycine decarboxylase complex	-	7e-52	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-4	48	Triticum aestivum	Ta.20834.1.S1_at	CA623315	-	-	1e-5	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select
0.47	7e-41	167	Vitis vinifera	1606585_at	CB339560	hypothetical protein LOC100250401	-	3e-27	At1g11860	aminomethyltransferase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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