Gene omics information

Query gene ID	Zm.13841.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.13841.1.S1_at	AY104076.1	-	-	2e-42	At3g62270	anion exchange family protein	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.485.1.A1_at	AI691349	-	-	8e-1	Atmg00140	-	S.X.	H.G.	Please select
0.53	69.1	Zm.777.1.S1_a_at	CD442368	hypothetical protein LOC100272376	-	4e-8	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.14471.1.A1_a_at	CF017210	60S ribosomal protein L7-1	-	8e-31	At2g44120	60S ribosomal protein L7 (RPL7C)	S.X.	H.G.	Please select
0.38	44.2	ZmAffx.774.1.A1_at	AI746198	hypothetical protein LOC100279501	-	2e+0	At2g41000	heat shock protein binding	S.X.	H.G.	Please select
0.36	41.3	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.1299.1.S1_at	40794996-27	-	-	0	Atmg00580	-	S.X.	H.G.	Please select
0.35	38.9	Zm.2763.1.S1_at	AW067129	hypothetical protein LOC100191545	-	9e-7	At1g19710	glycosyl transferase family 1 protein	S.X.	H.G.	Please select
0.31	31.6	Zm.14014.1.A1_at	CF050089	NADH-ubiquinone oxidoreductase 23 kDa subunit	-	2e-62	At1g79010	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.5	98.9	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
10.7	98.5	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.6	98.1	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.3	97.4	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.9	97.3	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.8	97.2	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.4	97.0	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.4	97.0	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.3	96.9	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.1	96.8	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.36	0	660	Zm.8976.1.A1_at	BM340601	boron transporter 1	-	4e-1	At3g06450	anion exchange family protein	C.G.	S.X.	Please select
0.04	3e-24	113	Zm.5258.1.A1_at	AI615160	-	-	8e+0	At4g01595	ATP binding / MAP kinase/ protein kinase	C.G.	S.X.	Please select
0.04	3e-24	113	Zm.5258.1.S1_at	AI615160	-	-	8e+0	At4g01595	ATP binding / MAP kinase/ protein kinase	C.G.	S.X.	Please select
0.01	4e-2	40	Zm.16778.1.A1_at	BM079117	RH2 protein-like	-	8e-69	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.12394.1.S1_at	AW519964	hypothetical protein LOC100279308	-	2e-8	At2g40550	ETG1 (E2F TARGET GENE 1)	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.17529.1.S1_at	CK394827	-	-	1e-45	At2g36250	FTSZ2-1	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.16809.1.A1_at	CF630043	-	-	6e-2	At3g42790	AL3 (ALFIN-LIKE 3)	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.14991.1.A1_at	BM337219	hypothetical protein LOC100275315	-	1e+0	At5g48240	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.5527.1.A1_at	BG840987	-	-	3e-1	At3g49950	scarecrow transcription factor family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	2e-42	174	Arabidopsis thaliana	At3g62270	825400	anion exchange family protein	F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.19	1e-32	143	Glycine max	GmaAffx.78135.1.S1_at	BM309768	-	-	3e-17	At3g62270	anion exchange family protein	C.G.	S.X.	Please select
0.27	2e-118	426	Hordeum vulgare	Contig19634_at	Contig19634	-	-	2e-6	At3g62270	anion exchange family protein	C.G.	S.X.	Please select
0.69	0	1933	Oryza sativa	Os12g0566000	AK100510.1	-	HCO3-transporter domain containing protein	5e-31	At3g62270	anion exchange family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	1e-23	113	Populus trichocarpa	PtpAffx.212779.1.S1_s_at	pmrna25011	anion exchanger family protein	-	3e-25	At2g47160	BOR1 (REQUIRES HIGH BORON 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	0	1411	Triticum aestivum	Ta.5402.1.S1_at	CK152012	-	-	7e-21	At3g62270	anion exchange family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Vitis vinifera	1616862_at	CB343429	hypothetical protein LOC100250930	-	1e+0	At2g19385	zinc ion binding	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage