Gene omics information

Query gene ID	Zm.1382.1.S1_at
Gene name	hypothetical protein LOC100194328
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.1382.1.S1_at	BQ528972	hypothetical protein LOC100194328	-	1e-1	At4g33130	-	S.X.	H.G.	Please select
0.75	90.8	Zm.5031.1.A1_at	AI600468	-	-	2e-2	At5g62160	AtZIP12 (ZINC TRANSPORTER 12 PRECURSOR)	S.X.	H.G.	Please select
0.73	89.9	Zm.18527.1.A1_at	CF630266	-	-	9e-1	At3g25110	AtFaTA (Arabidopsis FatA acyl-ACP thioesterase)	S.X.	H.G.	Please select
0.53	69.1	Zm.2806.1.A1_at	AW067337	-	-	6e-1	At2g41660	MIZ1 (mizu-kussei 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.4271.2.A1_at	AY103821.1	Isoflavone reductase-like1	-	2e-20	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.2789.1.A1_at	CO518764	-	-	5e+0	At2g39960	microsomal signal peptidase 25 kDa subunit, putative (SPC25)	S.X.	H.G.	Please select
0.43	52.8	Zm.5654.1.A1_at	BG874013	hypothetical protein LOC100280184	-	5e-1	At5g61200	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
58.5	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
52.4	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
41.8	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.1	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-3	42	Zm.3644.1.S1_at	CO525387	hypothetical protein AY111178 /// hypothetical protein LOC100191318 /// hypothetical protein LOC100217011	-	8e-1	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.6210.2.A1_at	CF631508	vacuolar ATP synthase 16 kDa proteolipid subunit	-	7e-31	At1g19910	AVA-P2	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.1067.2.A1_at	CF626025	vacuolar ATP synthase 16 kDa proteolipid subunit	-	2e-56	At1g75630	AVA-P4	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.10515.1.S1_at	CO531603	peroxidase 65	-	1e-8	At5g47000	peroxidase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.9563.1.A1_at	AY072297.1	flavonoid 3-monooxygenase	-	3e+0	At4g16410	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.877.1.A1_at	BM078654	hypothetical protein LOC100276059	-	8e+0	At1g01750	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.8521.1.A1_at	BM078248	-	-	3e-3	At5g24890	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3701.1.S1_at	CF636730	cysteine protease 1	-	1e-2	At5g43060	cysteine proteinase, putative / thiol protease, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.3153.3.S1_a_at	CF624577	B12D protein	-	1e-3	At1g20440	COR47 (COLD-REGULATED 47)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At4g33130	829450	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-2	40	Glycine max	GmaAffx.63256.1.S1_at	AI900416	-	-	3e+0	At2g01630	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	C.G.	S.X.	Please select
0.03	5e-3	42	Hordeum vulgare	Contig15302_at	Contig15302	-	-	5e+0	At2g47670	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.09	6e-15	83	Oryza sativa	Os03g0152300	AK070875.1	-	-	2e-1	At3g49960	peroxidase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.220237.1.S1_at	pmrna36599	hypothetical protein	-	4e-2	At5g11230	organic anion transmembrane transporter	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	1e-8	61	Triticum aestivum	Ta.3837.1.A1_at	BJ253136	-	-	5e-2	At3g28200	peroxidase, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1621192_at	CF516648	hypothetical protein LOC100248705	-	4e+0	At2g27920	SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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