Gene omics information

Query gene ID	Zm.13797.2.A1_at
Gene name	hypothetical protein LOC100279789
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.13797.2.A1_at	AY105820.1	hypothetical protein LOC100279789	-	8e-4	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	S.X.	H.G.	Please select
0.59	76.1	Zm.13250.1.S1_at	CN844210	Zea mays MADS14	-	3e-2	At2g03710	SEP4 (SEPALLATA 4)	S.X.	H.G.	Please select
0.50	65.7	Zm.17843.2.A1_at	CD999046	hypothetical protein LOC100216964	-	6e-1	At2g47910	CRR6 (chlororespiratory reduction 6)	S.X.	H.G.	Please select
0.50	65.7	Zm.18352.1.S1_at	CO527044	glucan endo-1,3-beta-glucosidase, acidic isoform	-	1e+1	At5g62470	MYB96 (myb domain protein 96)	S.X.	H.G.	Please select
0.50	65.7	Zm.12958.1.A1_at	CA402421	hypothetical protein LOC100217276	-	9e+0	At5g43245	unknown protein	S.X.	H.G.	Please select
0.48	61.3	Zm.7397.1.A1_at	BQ539216	hypothetical protein LOC100277233	-	5e-4	At3g05550	hypoxia-responsive family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.7826.2.A1_at	AY107684.1	-	-	5e+0	At4g22517	-	S.X.	H.G.	Please select
0.42	51.3	Zm.6606.1.A1_at	AI467702	hypothetical protein LOC100272956	-	8e-7	At3g53500	zinc knuckle (CCHC-type) family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.7727.4.S1_s_at	CF972403	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	2e-102	At4g05320	UBQ10 (POLYUBIQUITIN 10)	S.X.	H.G.	Please select
0.37	42.3	Zm.18351.1.S1_at	CO529439	-	-	2e+0	At2g21140	ATPRP2 (PROLINE-RICH PROTEIN 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	98.5	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
10.1	98.4	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
9.5	98.3	GSM206322	Lower pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
8.5	98.1	GSM206293	Right pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.6	97.9	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
7.4	97.8	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM206291	Upper pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM206321	Lower pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	2767	Zm.13797.2.S1_at	AY105820.1	-	-	3e-6	At1g73730	EIL3 (ETHYLENE-INSENSITIVE3-LIKE3)	C.G.	S.X.	Please select
0.33	1e-114	412	Zm.4995.1.A1_at	CA401993	ETHYLENE-INSENSITIVE3-like 1 protein	-	1e-2	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.10	2e-67	256	Zm.13797.1.A1_at	CO521528	-	-	9e+0	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.01	9e-2	38	Zm.13067.1.A1_at	CA404030	hypothetical protein LOC100216884	-	5e-1	At4g17550	transporter-related	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.10301.1.A1_at	BU050993	-	-	1e+0	At4g03565	-	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.10301.1.A1_s_at	BU050993	hypothetical protein LOC100273535	-	1e+0	At4g03565	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6207.4.A1_at	BQ538453	Hypothetical protein LOC100194345	-	6e-19	At2g04390	40S ribosomal protein S17 (RPS17A)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3876.1.S1_at	AY111960.1	hypothetical protein LOC100278092	-	5e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.2373.1.A1_at	CF632228	hypothetical protein LOC100191352	-	3e-3	At5g06370	NC domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-4	46	Arabidopsis thaliana	At3g20770	821625	EIN3 (ETHYLENE-INSENSITIVE3)	ethylene-insensitive3	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-7	57	Glycine max	GmaAffx.91848.1.S1_s_at	CF807208	-	-	1e-58	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.51	0	843	Hordeum vulgare	Contig4395_at	Contig4395	-	-	3e-1	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.49	0	912	Oryza sativa	Os03g0324200	AK101076.1	-	EIL3	8e-2	At5g21120	EIL2 (ETHYLENE-INSENSITIVE3-LIKE 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	5e-3	44	Populus trichocarpa	Ptp.7383.2.S1_a_at	CX184621	-	-	2e-40	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	823	Triticum aestivum	Ta.9677.2.S1_at	BQ579233	-	-	1e+0	At1g73730	EIL3 (ETHYLENE-INSENSITIVE3-LIKE3)	C.G.	S.X.	Please select
0.08	3e-10	65	Vitis vinifera	1619145_s_at	CB969125	hypothetical protein LOC100250496	-	6e-36	At2g27050	EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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