Gene omics information

Query gene ID	Zm.13794.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.13794.1.S1_at	AY104961.1	-	-	7e-1	At5g53280	PDV1 (PLASTID DIVISION1)	S.X.	H.G.	Please select
0.55	71.6	Zm.14433.1.S1_at	CA401946	hypothetical protein LOC100192707	-	2e+0	At5g02310	PRT6 (PROTEOLYSIS 6)	S.X.	H.G.	Please select
0.50	65.7	Zm.6974.1.A1_at	BM078279	hypothetical protein LOC100276561	-	8e-1	At5g57887	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.9023.1.A1_at	AY109177.1	-	-	4e-14	At4g02480	AAA-type ATPase family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5977.1.A1_at	BM349445	hypothetical protein LOC100277569	-	1e-1	At1g74530	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.19094.1.S1_at	CO522607	hypothetical protein LOC100279575	-	2e-4	At1g14540	anionic peroxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.5	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.0	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.6	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2516	Zm.13794.1.A1_at	AY104961.1	hypothetical protein LOC100278526	-	7e-1	At5g53280	PDV1 (PLASTID DIVISION1)	C.G.	S.X.	Please select
0.04	1e-9	63	Zm.6113.1.A1_at	CF630251	-	-	7e-2	At4g22745	MBD1	C.G.	S.X.	Please select
0.06	1e-9	63	Zm.6113.2.S1_at	CD437021	hypothetical protein LOC100276316	-	7e-1	At4g22745	MBD1	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.452.1.S1_at	CA404845	hypothetical LOC541772	-	6e-6	At4g02030	-	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4861.1.S1_at	AY109124.1	-	-	3e-1	At5g26070	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.17535.1.A1_at	CK368643	-	-	4e+0	At2g35345	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.13701.1.A1_at	AY106667.1	hypothetical protein LOC100274153	-	1e-14	At5g03940	CPSRP54 (CHLOROPLAST SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT)	C.G.	S.X.	Please select
0.03	4e+0	32	ZmAffx.142.1.A1_at	AI667789	-	-	2e+1	At5g09978	PEP7 (ELICITOR PEPTIDE 7 PRECURSOR)	C.G.	S.X.	Please select
0.03	4e+0	32	ZmAffx.142.1.S1_at	AI667789	-	-	2e+1	At5g09978	PEP7 (ELICITOR PEPTIDE 7 PRECURSOR)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	Arabidopsis thaliana	At5g53280	835409	PDV1 (PLASTID DIVISION1)	An integral outer envelope membrane protein (as its homolog PDV2), component of the plastid division machinery. Similar to ARC5, PDV1 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. Topological analysis showed that the large N-terminal region of PDV1 upstream of the transmembrane helix bearing a putative coiled-coil domain is exposed to the cytosol. Mutation of the conserved PDV1 C-terminal Gly residue did not block PDV1 insertion into the outer envelope membrane but did abolish its localization to the division site.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	GmaAffx.37270.1.S1_at	BF423921	-	-	1e+0	At3g63490	ribosomal protein L1 family protein	C.G.	S.X.	Please select
0.22	3e-66	252	Hordeum vulgare	Contig6080_at	Contig6080	-	-	2e+0	At1g35210	unknown protein	C.G.	S.X.	Please select
0.16	4e-62	240	Oryza sativa	Os02g0745600	AK103517.1	-	Conserved hypothetical protein	4e+0	Atmg00650	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	9e-1	36	Populus trichocarpa	Ptp.497.1.S1_at	CK087555	-	-	2e-1	At1g19730	ATTRX4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-11	71	Triticum aestivum	Ta.10039.1.S1_at	BQ168415	-	-	3e+0	At5g05280	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1607678_at	CB972163	hypothetical protein LOC100254822	-	3e-25	At2g34710	PHB (PHABULOSA)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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