Gene omics information

Query gene ID	Zm.13792.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.13792.1.A1_at	CK700839	-	-	2e-5	At5g19130	GPI transamidase component family protein / Gaa1-like family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.14479.1.S1_a_at	CD436553	S-adenosyl methionine decarboxylase2	-	1e+0	At5g15950	adenosylmethionine decarboxylase family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.9484.1.A1_at	BM269244	-	-	9e+0	At5g55330	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	S.X.	H.G.	Please select
0.43	52.8	Zm.14034.1.A1_at	CD955909	hypothetical protein LOC100273157	-	4e-14	At5g53140	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.17955.2.A1_a_at	CK347228	-	-	5e+0	At4g32530	vacuolar ATP synthase, putative / V-ATPase, putative	S.X.	H.G.	Please select
0.29	28.1	Zm.12530.1.A1_at	AI738334	-	-	5e+0	At5g38170	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.20	14.2	Zm.19306.1.A1_at	AI664819	hypothetical protein LOC100193355	-	6e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
37.2	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.6	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.6	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.5	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	0	2147	Zm.13792.1.S1_at	AY105096.1	hypothetical protein LOC100275097	-	2e-5	At5g19130	GPI transamidase component family protein / Gaa1-like family protein	C.G.	S.X.	Please select
0.01	4e-2	40	ZmAffx.823.1.S1_at	AI770503	-	-	1e-5	At3g07080	membrane protein	C.G.	S.X.	Please select
0.01	4e-2	40	ZmAffx.823.1.A1_at	AI770503	-	-	1e-5	At3g07080	membrane protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.5573.2.A1_at	CA403693	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase	-	9e-93	At5g17920	ATMS1	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.2717.1.A1_at	CK347342	-	-	6e-6	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.2662.1.A1_at	AW066760	-	-	8e-11	At4g26900	AT-HF (HIS HF)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.13476.2.S1_at	CF043863	hypothetical protein LOC100276044	-	4e+0	At5g66658	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.13191.1.S1_at	CO519529	hypothetical protein LOC100279543	-	3e+0	At2g20260	PSAE-2 (photosystem I subunit E-2)	C.G.	S.X.	Please select
0.01	9e+0	32	ZmAffx.976.1.A1_at	AI833931	-	-	1e-2	At4g23880	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-5	52	Arabidopsis thaliana	At5g19130	832033	GPI transamidase component family protein / Gaa1-like family protein	F:GPI-anchor transamidase activity;P:unknown;C:endoplasmic reticulum;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-6	56	Glycine max	GmaAffx.74537.1.S1_at	BU760697	-	-	2e-7	At5g19130	GPI transamidase component family protein / Gaa1-like family protein	C.G.	S.X.	Please select
0.01	6e-1	36	Hordeum vulgare	HVSMEg0006E16f2_at	HVSMEg0006E16f2	-	-	3e+0	At2g39540	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.15	5e-131	470	Oryza sativa	Os.17811.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e-4	48	Populus trichocarpa	PtpAffx.13770.1.S1_s_at	BI139343	hypothetical protein	-	1e-18	At5g19130	GPI transamidase component family protein / Gaa1-like family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	3e-103	377	Triticum aestivum	TaAffx.12545.1.S1_at	CA742858	-	-	7e-2	At4g36640	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Vitis vinifera	1620652_at	CB340675	hypothetical protein LOC100258683	-	1e+0	At1g14315	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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