Gene omics information

Query gene ID	Zm.13760.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.0	Zm.13760.1.A1_at	AY105817.1	-	-	5e+0	At5g27280	zinc finger (DNL type) family protein	S.X.	H.G.	Please select
0.54	69.8	Zm.6067.1.S1_at	CA398401	-	-	6e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	S.X.	H.G.	Please select
0.52	67.3	Zm.4810.1.S1_at	AI745785	-	-	5e+0	At3g60390	HAT3 (HOMEOBOX-LEUCINE ZIPPER PROTEIN 3)	S.X.	H.G.	Please select
0.47	59.9	Zm.16824.2.S1_at	BM340171	-	-	1e+0	At3g07170	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.46	58.4	Zm.9834.1.A1_at	AY112139.1	-	-	2e+1	At5g28919	-	S.X.	H.G.	Please select
0.44	55.7	Zm.4283.2.S1_at	AY109824.1	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	S.X.	H.G.	Please select
0.39	45.6	Zm.14802.1.S1_at	CK371044	hypothetical protein LOC100277516	-	6e+0	At3g13674	unknown protein	S.X.	H.G.	Please select
0.37	42.3	Zm.6597.1.A1_at	AY106822.1	hypothetical protein LOC100279221	-	8e-9	At2g20050	ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase	S.X.	H.G.	Please select
0.34	37.2	Zm.5450.1.A1_at	CO521828	hypothetical protein LOC100216592	-	1e-1	At1g08080	ACA7 (ALPHA CARBONIC ANHYDRASE 7)	S.X.	H.G.	Please select
0.34	37.2	Zm.6715.2.A1_at	BM337592	RING finger and CHY zinc finger domain-containing protein 1	-	3e-10	At5g25560	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.2	98.4	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.3	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.2	97.4	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.0	96.7	GSM206323	Left pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.0	96.7	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.9	96.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	7e-10	63	Zm.13120.1.A1_at	CK347606	Hypothetical protein LOC100191270	-	4e-2	At2g01340	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.16322.1.A1_at	BG873909	hypothetical protein LOC100280029	-	2e+0	At5g62330	-	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.12886.1.A1_at	CA401126	holliday junction resolvase	-	2e-2	At1g12244	DNA binding / hydrolase, acting on ester bonds / nuclease/ nucleic acid binding / recombinase	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6787.1.A1_at	AF277454.1	UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6787.1.A1_a_at	AF277454.1	hypothetical protein LOC100274407 /// UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4463.1.A1_at	BG266174	hypothetical protein LOC100276419	-	5e-3	At1g75110	RRA2 (REDUCED RESIDUAL ARABINOSE 2)	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.8748.1.A1_at	BM340490	hypothetical protein LOC100275684	-	2e+0	At4g34590	GBF6 (G-BOX BINDING FACTOR 6)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.8470.1.S1_at	AF493561.1	sucrose-phosphatase	-	4e+0	At5g17220	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.7011.1.S1_s_at	CA398268	hypothetical protein LOC100191203	-	3e-19	At4g21110	G10 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g27280	832786	zinc finger (DNL type) family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.51734.1.A1_at	BU550370	-	-	4e+0	At5g38400	unknown protein	C.G.	S.X.	Please select
0.06	7e-7	54	Hordeum vulgare	Contig10221_at	Contig10221	-	-	6e-1	At4g33520	PAA1 (P-TYPE ATP-ASE 1)	C.G.	S.X.	Please select
0.07	7e-10	65	Oryza sativa	Os12g0230600	CB659104	-	Conserved hypothetical protein	2e-2	At2g31560	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.214224.1.S1_x_at	pmrna27674	hypothetical protein	-	3e-18	At5g11040	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.25	4e-19	95	Triticum aestivum	Ta.26605.1.S1_at	CD491339	-	-	1e-1	At1g55160	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1613848_at	CF568786	-	-	4e-9	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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