CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.13740.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.13740.1.A1_at AW330707 - - 2e-16 At2g29140 APUM3 (Arabidopsis Pumilio 3) S.X. H.G.
0.54 69.8 Zm.11196.1.A1_at BM379862 hypothetical protein LOC100275201 - 1e+0 At5g64160 unknown protein S.X. H.G.
0.53 69.1 Zm.11943.1.S1_at CO523092 dihydroflavonol-4-reductase - 7e-4 At5g42800 DFR (DIHYDROFLAVONOL 4-REDUCTASE) S.X. H.G.
0.53 69.1 Zm.6339.1.A1_at AI691450 - - 3e-1 At5g11930 glutaredoxin family protein S.X. H.G.
0.51 66.4 ZmAffx.1046.1.A1_at AI881792 - - 8e-1 At1g79160 unknown protein S.X. H.G.
0.48 61.3 Zm.15817.1.A1_at D87044.1 protein kinase catalytic domain - 3e-8 At5g04870 CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1) S.X. H.G.
0.47 59.9 Zm.8632.1.A1_at BM268513 - - 5e+0 At3g55672 - S.X. H.G.
0.47 59.9 ZmAffx.201.1.S1_at AI670148 - - 3e+0 At2g27740 unknown protein S.X. H.G.
0.47 59.9 Zm.1581.1.S1_at AW566202 - - 1e+1 At3g43153 cAMP-dependent protein kinase inhibitor-related S.X. H.G.
0.44 55.7 Zm.3169.5.S1_a_at AI739763 hypothetical protein LOC100279753 /// minichromosome maintenance protein - 1e-1 At5g44635 minichromosome maintenance family protein / MCM family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.6 96.4 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
4.5 96.3 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis
4.3 96.1 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM206330 Lower pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.8 95.5 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6 95.2 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.2 94.5 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM206324 Upper pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-13 75 Zm.3174.1.A1_at BM072921 AP-2 complex subunit sigma-1 - 5e-50 At1g47830 clathrin coat assembly protein, putative C.G. S.X.
0.06 3e-13 75 Zm.2825.2.A1_at AY103788.1 - - 1e-9 At2g29140 APUM3 (Arabidopsis Pumilio 3) C.G. S.X.
0.03 4e-12 71 Zm.995.1.A1_at CF040767 - - 2e+0 At5g26080 proline-rich family protein C.G. S.X.
0.02 4e-12 71 Zm.7297.1.S1_at T18738 - - 2e-48 At5g50920 CLPC1 C.G. S.X.
0.03 4e-12 71 Zm.4613.1.A1_at CK826972 - - 5e-1 At1g73770 unknown protein C.G. S.X.
0.03 4e-12 71 Zm.18100.1.S1_at AI967288 - - 8e-4 At5g04740 ACT domain-containing protein C.G. S.X.
0.03 4e-12 71 Zm.18100.1.S1_a_at AI967288 - - 8e-4 At5g04740 ACT domain-containing protein C.G. S.X.
0.04 4e-12 71 Zm.13765.1.S1_at AY105680.1 hypothetical protein LOC100191482 - 3e-1 At4g23910 unknown protein C.G. S.X.
0.04 4e-12 71 Zm.12882.1.S1_at CD442601 hypothetical protein LOC100277163 - 4e-1 At1g29179 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.13 2e-16 87 Arabidopsis thaliana At2g29140 817463 APUM3 (Arabidopsis Pumilio 3) F:RNA binding, binding;P:unknown;C:plasma membrane;FOMPB - - - C.G. S.X.
0.17 2e-11 71 Glycine max Gma.16338.1.S1_at BI968705 - - 6e-31 At2g29190 APUM2 (Arabidopsis Pumilio 2) C.G. S.X.
0.21 5e-52 204 Hordeum vulgare Contig24225_at Contig24225 - - 2e-12 At3g10360 APUM4 (Arabidopsis Pumilio 4) C.G. S.X.
0.34 2e-73 278 Oryza sativa Os02g0819300 CB671807 - ARM repeat fold domain containing protein 1e-7 At2g29140 APUM3 (Arabidopsis Pumilio 3) C.G. S.X.
0.11 1e-8 61 Populus trichocarpa PtpAffx.207623.1.S1_at pmrna15115 hypothetical protein - 1e-41 At3g10360 APUM4 (Arabidopsis Pumilio 4) C.G. S.X.
0.40 3e-123 442 Triticum aestivum TaAffx.48100.1.S1_at CA603041 - - 1e-14 At3g10360 APUM4 (Arabidopsis Pumilio 4) C.G. S.X.
0.21 9e-25 113 Vitis vinifera 1616446_at CB978171 hypothetical protein LOC100265064 - 3e-67 At2g29140 APUM3 (Arabidopsis Pumilio 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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