Gene omics information

Query gene ID	Zm.13728.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	90.8	Zm.13728.2.S1_at	AY106266.1	-	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	S.X.	H.G.	Please select
0.49	61.9	Zm.8477.1.S1_at	CD991129	VAMP protein SEC22	-	3e+0	At3g12090	TET6 (TETRASPANIN6)	S.X.	H.G.	Please select
0.43	52.8	Zm.11626.1.A1_a_at	CA404483	hypothetical protein LOC100272474	-	1e+1	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	S.X.	H.G.	Please select
0.42	51.3	Zm.8540.1.A1_at	BM079841	hypothetical protein LOC100193457	-	4e-36	At5g63440	unknown protein	S.X.	H.G.	Please select
0.39	45.6	Zm.5401.2.A1_at	AY104186.1	hypothetical protein LOC100274064	-	9e-121	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	S.X.	H.G.	Please select
0.37	42.3	Zm.11627.1.A1_x_at	BM379409	-	-	1e+0	At2g26260	AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2)	S.X.	H.G.	Please select
0.35	38.9	Zm.6601.2.A1_a_at	BM078978	hypothetical protein LOC100191456	-	1e-17	At3g18190	chaperonin, putative	S.X.	H.G.	Please select
0.35	38.9	Zm.7788.1.A1_at	CK347752	anthocyanidin 3-O-glucosyltransferase	-	9e-1	At3g24093	-	S.X.	H.G.	Please select
0.30	29.8	Zm.2781.1.S1_at	CF007960	-	-	5e+0	At4g35480	RHA3B	S.X.	H.G.	Please select
0.28	28.1	Zm.3770.2.A1_at	CD437110	hypothetical protein LOC100278844	-	2e-47	At5g07290	AML4 (ARABIDOPSIS MEI2-LIKE 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.3	99.3	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
18.6	99.2	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
10.4	98.4	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.6	98.1	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.3	98.0	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.3	98.0	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.9	97.7	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.7	97.6	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.1	97.4	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.2	96.9	GSM162265	Wild type 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	2127	Zm.13728.2.S1_a_at	AY106266.1	alpha-expansin 4	-	1e-14	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.58	0	1120	Zm.13728.1.S1_at	AF332172.1	alpha-expansin 4	-	2e-19	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.34	1e-40	167	Zm.665.1.S1_at	AF332169.1	alpha expansin1	-	7e-13	At2g37640	EXP3	C.G.	S.X.	Please select
0.22	2e-32	139	Zm.14498.1.A1_at	AF332170.1	alpha expansin2	-	3e-15	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.22	2e-29	129	Zm.669.1.S1_at	AF332173.1	alpha-expansin 5	-	8e-4	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please select
0.26	8e-20	97	Zm.14498.2.A1_at	AI691791	-	-	2e-4	At1g26770	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	C.G.	S.X.	Please select
0.17	1e-15	83	Zm.667.1.A1_at	AF332171.1	alpha-expansin 3	-	1e-7	At1g20190	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	C.G.	S.X.	Please select
0.03	5e-6	52	ZmAffx.673.1.A1_at	AI691345	alpha-expansin 20	-	1e-2	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.07	3e-4	46	Zm.18254.1.S1_a_at	AI664878	hypothetical protein LOC100191303 /// hypothetical protein LOC100193290	-	6e-1	At5g37550	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	1e-14	81	Arabidopsis thaliana	At3g55500	824715	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.41	6e-45	182	Glycine max	GmaAffx.93176.1.S1_s_at	CF808901	expansin	-	2e-24	At2g28950	ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6)	C.G.	S.X.	Please select
0.30	4e-31	135	Hordeum vulgare	Contig3675_at	Contig3675	-	-	2e-10	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.33	8e-39	163	Oryza sativa	Os03g0336400	AF247163.1	-	Expansin S1	1e-5	At1g69530	ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	5e-27	123	Populus trichocarpa	PtpAffx.24775.2.A1_s_at	CV272777	hypothetical protein	-	1e-41	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	0	854	Triticum aestivum	Ta.5046.1.S1_at	AY543535.1	expansin EXPA9	-	3e-24	At2g37640	EXP3	C.G.	S.X.	Please select
0.34	1e-30	133	Vitis vinifera	1608191_at	CD798831	hypothetical protein LOC100245911	-	4e-20	At2g39700	ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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