Gene omics information

Query gene ID	Zm.13717.1.S1_at
Gene name	SC3 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.87	96.4	Zm.13717.1.S1_at	AY106421.1	SC3 protein	-	9e-16	At2g20840	secretory carrier membrane protein (SCAMP) family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.13347.1.S1_a_at	CF633171	hypothetical protein LOC100191936	-	6e-1	At1g54240	DNA binding	S.X.	H.G.	Please select
0.27	24.6	Zm.2964.1.S1_s_at	AY106674.1	hypothetical protein LOC100191774	-	2e-4	At1g06690	aldo/keto reductase family protein	S.X.	H.G.	Please select
0.23	18.6	Zm.5309.1.A1_a_at	AI619196	hypothetical protein LOC100192865 /// proteasome subunit beta type 4	-	7e-10	At1g56450	PBG1	S.X.	H.G.	Please select
0.12	5.9	Zm.3983.2.A1_at	AI820263	-	-	8e-1	At3g60510	enoyl-CoA hydratase/isomerase family protein	S.X.	H.G.	Please select
0.11	5.3	Zm.11662.1.A1_at	BM379784	-	-	6e-1	At1g50930	unknown protein	S.X.	H.G.	Please select
0.09	4.0	Zm.13714.1.S1_at	CF245179	hypothetical protein LOC100272524	-	1e-14	At2g01060	myb family transcription factor	S.X.	H.G.	Please select
0.08	3.4	Zm.6857.1.S1_at	CF046870	protein binding protein	-	1e-8	At1g63170	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.08	3.4	Zm.6480.2.S1_at	AI065715	-	-	1e-11	At5g64200	ATSC35	S.X.	H.G.	Please select
0.08	3.4	Zm.17988.1.A1_at	CO520918	-	-	6e-10	At4g26970	aconitate hydratase/ copper ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.3	96.9	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.2	96.9	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
5.2	96.9	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.0	96.7	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.8	96.6	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.6	96.4	GSM206334	Lower pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.4	96.2	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.4	96.2	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.3	96.1	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	3e-84	311	Zm.1176.1.S1_at	BE511858	-	-	5e-3	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.30	5e-71	268	Zm.3508.1.S1_at	BQ619526	SC3 protein	-	3e-11	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.09	3e-38	159	Zm.8581.1.A1_at	BM267381	hypothetical protein LOC100216584	-	4e-2	At3g46030	HTB11	C.G.	S.X.	Please select
0.23	2e-30	133	Zm.15892.1.S1_at	AI712275	SC3 protein	-	9e-13	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Zm.3407.1.S1_at	BM080146	SC3 protein	-	3e-6	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.03	8e-2	38	Zm.2391.1.A1_at	CK826632	SC3 protein	-	2e+0	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.5605.1.S1_at	CO528780	-	-	1e+0	At1g18680	HNH endonuclease domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	ZmAffx.1039.1.A1_at	AI881774	-	-	3e+0	At2g43240	nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please select
0.02	1e+0	34	ZmAffx.1039.1.S1_at	AI881774	-	-	3e+0	At2g43240	nucleotide-sugar transmembrane transporter/ sugar:hydrogen symporter	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	9e-16	85	Arabidopsis thaliana	At2g20840	816617	secretory carrier membrane protein (SCAMP) family protein	F:transmembrane transporter activity;P:protein transport;C:plasma membrane;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	4e-9	63	Glycine max	Gma.4485.1.S1_at	BE347874	-	-	8e-13	At1g61250	SC3 (SECRETORY CARRIER 3)	C.G.	S.X.	Please select
0.54	0	803	Hordeum vulgare	Contig6807_at	Contig6807	-	-	8e-19	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.57	0	948	Oryza sativa	Os05g0503000	AK068335.1	-	Secretory carrier membrane protein	2e-16	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	5e-24	113	Populus trichocarpa	PtpAffx.15659.1.S1_at	CV232365	hypothetical protein	-	2e-84	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	0	662	Triticum aestivum	Ta.10284.1.S1_a_at	BU672165	-	-	9e-19	At2g20840	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.23	1e-12	73	Vitis vinifera	1612790_at	CF608251	hypothetical protein LOC100243027	-	1e-17	At1g61250	SC3 (SECRETORY CARRIER 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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