Gene omics information

Query gene ID	Zm.13707.1.A1_at
Gene name	rhythmically expressed protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	91.1	Zm.13707.1.A1_at	BQ547937	rhythmically expressed protein	-	2e-14	At2g41250	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.72	88.6	Zm.2489.1.A1_at	CD447064	mitochondrial chaperonin-60	-	8e-82	At3g23990	HSP60 (HEAT SHOCK PROTEIN 60)	S.X.	H.G.	Please select
0.58	75.1	Zm.157.1.S1_at	AY107763.1	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.56	74.4		-	-	-	0			S.X.	H.G.	Please select
0.55	71.6	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.6927.2.A1_a_at	CF038958	hypothetical protein LOC100194137	-	1e-20	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	S.X.	H.G.	Please select
0.53	69.1	Zm.14807.1.S1_at	BU050489	Hypothetical protein LOC100192365	-	3e+0	At5g15560	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.16861.2.S1_at	AW498347	L-ascorbate oxidase	-	7e-4	At1g55570	sks12 (SKU5 Similar 12)	S.X.	H.G.	Please select
0.47	59.9	Zm.3623.1.S1_at	BG873827	hypothetical protein LOC100216808	-	7e+0	At5g52440	HCF106	S.X.	H.G.	Please select
0.43	52.8	Zm.17572.2.S1_at	CF972387	heat- and acid-stable phosphoprotein	-	3e-8	At5g46020	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.9	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	9e-24	109	Zm.1338.1.A1_at	AY107813.1	-	-	6e+0	At5g15350	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.30	9e-24	109	Zm.1338.1.S1_at	W49442	-	-	6e+0	At5g15350	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.03	4e-1	34	Zm.5347.1.A1_at	CO522616	-	-	1e+0	At1g65720	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7083.1.A1_a_at	BM080705	methylcrotonoyl-CoA carboxylase subunit alpha	-	2e+0	At1g16705	p300/CBP acetyltransferase-related protein-related	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.553.1.S1_at	AF244692.1	glutathione S-transferase GST 27	-	2e+0	At3g50250	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4858.1.A1_at	AI691395	-	-	3e+0	At1g28000	-	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.9842.1.A1_at	BM340816	-	-	3e-1	At5g20370	serine-rich protein-related	C.G.	S.X.	Please select
0.03	7e+0	30	Zm.8157.1.A1_at	BM073110	-	-	1e+0	At5g16870	aminoacyl-tRNA hydrolase	C.G.	S.X.	Please select
0.02	7e+0	30	Zm.692.1.S1_at	BM333903	gtk16 protein	-	7e-4	At4g17790	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e-14	79	Arabidopsis thaliana	At2g41250	818724	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:mitochondrion;BOMAPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	3e-11	69	Glycine max	Gma.16567.1.A1_at	BU084135	-	-	3e+0	At3g48330	PIMT1 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.23	2e-46	184	Hordeum vulgare	Contig5020_s_at	Contig5020	-	-	4e-5	At2g41250	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.27	4e-51	202	Oryza sativa	Os.55604.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	3e-26	119	Populus trichocarpa	PtpAffx.3461.1.S1_at	CV239569	hypothetical protein	-	3e-52	At2g41250	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	2e-48	192	Triticum aestivum	Ta.15783.1.A1_at	CA486883	-	-	2e-8	At2g41250	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.21	4e-16	83	Vitis vinifera	1622630_s_at	CF209498	hypothetical protein LOC100253858	-	1e-29	At2g41250	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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