Gene omics information

Query gene ID	Zm.13705.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.69	86.5	Zm.13705.1.A1_at	AY106620.1	-	-	9e-7	At3g55770	LIM domain-containing protein	S.X.	H.G.	Please select
0.60	77.8	Zm.5979.1.A1_at	AI666020	MYB-like protein E1	-	2e+0	At2g35980	YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)	S.X.	H.G.	Please select
0.56	74.4	Zm.17748.1.S1_s_at	CK371075	protein kinase-like	-	2e+0	At1g80865	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.1942.1.A1_at	CF014864	-	-	7e-57	At5g49460	ACLB-2 (ATP CITRATE LYASE SUBUNIT B 2)	S.X.	H.G.	Please select
0.41	49.7	Zm.5181.1.A1_at	CF030446	CK2 protein kinase alpha 2	-	1e-82	At2g23080	casein kinase II alpha chain, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.202.1.S1_at	AB018591.1	gibberellin responsive1	-	3e+0	At5g40620	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.5476.1.S1_at	CF628603	T-complex protein 1 subunit epsilon	-	4e-80	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	S.X.	H.G.	Please select
0.31	31.6	Zm.5987.1.A1_at	BM075175	cysteine protease 1	-	7e-14	At5g43060	cysteine proteinase, putative / thiol protease, putative	S.X.	H.G.	Please select
0.29	28.1	Zm.10086.1.A1_x_at	BM379200	-	-	3e-1	At3g63110	ATIPT3 (ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 3)	S.X.	H.G.	Please select
0.25	21.3	Zm.2635.1.A1_at	CF244162	hypothetical protein LOC100216945	-	7e-9	At5g63040	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
44.7	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
39.1	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.9	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.9	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	9e-36	149	Zm.1212.1.S1_at	CF011510	hypothetical protein LOC100194335	-	2e-4	At3g55770	LIM domain-containing protein	C.G.	S.X.	Please select
0.10	2e-9	61	Zm.6444.1.S1_at	AY103686.1	pollen-specific protein SF3	-	8e-22	At3g55770	LIM domain-containing protein	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.947.1.A1_at	BF733123	-	-	2e-2	At3g17180	scpl33 (serine carboxypeptidase-like 33)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.8361.1.A1_at	BM073831	-	-	5e+0	At3g16370	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.8062.1.A1_at	BM380417	-	-	2e-5	At1g68920	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.493.1.A1_at	BM333846	LIM transcription factor homolog	-	5e-23	At1g10200	WLIM1	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.3088.1.S1_at	AW155774	serine carboxypeptidase 1	-	4e+0	At5g52750	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.17584.1.S1_at	CK369026	-	-	8e-5	At5g42050	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	9e-7	54	Arabidopsis thaliana	At3g55770	824743	LIM domain-containing protein	F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	PsAffx.CL1947Contig1_s_at	PsAffx.CL1947Contig1	-	-	2e+1	At5g42680	unknown protein	C.G.	S.X.	Please select
0.18	8e-15	79	Hordeum vulgare	Contig20748_at	Contig20748	-	-	9e-1	At4g32030	unknown protein	C.G.	S.X.	Please select
0.22	5e-47	188	Oryza sativa	Os02g0641000	9630.m04106	-	Transcription factor L2	6e-15	At3g61230	LIM domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	5e-3	42	Populus trichocarpa	PtpAffx.162024.1.A1_at	CK088270	hypothetical protein	-	6e-18	At3g61230	LIM domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.19	9e-41	167	Triticum aestivum	Ta.4081.1.S1_at	CD454196	-	-	6e-16	At3g61230	LIM domain-containing protein	C.G.	S.X.	Please select
0.03	4e-3	40	Vitis vinifera	1611183_at	BQ798578	hypothetical protein LOC100263273	-	6e-63	At3g55770	LIM domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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