Gene omics information

Query gene ID	Zm.13670.1.A1_at
Gene name	hypothetical protein LOC100276497
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.13670.1.A1_at	AY107037.1	hypothetical protein LOC100276497	-	3e-3	At5g34930	arogenate dehydrogenase	S.X.	H.G.	Please select
0.77	92.1	Zm.12163.1.A1_at	AY108503.1	-	-	2e-2	At5g59500	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.9715.1.A1_at	AY106950.1	hypothetical protein LOC100272777	-	3e-5	At3g24360	enoyl-CoA hydratase/isomerase family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.17730.1.A1_at	CK370416	-	-	2e-1	At4g33210	F-box family protein (FBL15)	S.X.	H.G.	Please select
0.55	71.6	Zm.9660.1.A1_at	BM341687	-	-	5e+0	At4g13095	LCR37 (Low-molecular-weight cysteine-rich 37)	S.X.	H.G.	Please select
0.40	48.5	Zm.9716.1.A1_at	BM351220	-	-	1e+0	At2g37340	RSZ33	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.5	99.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-3	42	ZmAffx.372.1.A1_at	AI673888	anther-specific protein SF18	-	8e-1	At3g59680	unknown protein	C.G.	S.X.	Please select
0.03	4e-3	42	ZmAffx.372.1.S1_at	AI673888	-	-	8e-1	At3g59680	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	ZmAffx.259.1.S1_s_at	AI668215	Glycine-rich protein	-	9e-1	At5g40970	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.10811.1.A1_s_at	CK370484	hypothetical protein LOC100192755 /// hypothetical protein LOC100277885 /// glycine-rich protein	-	1e-7	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.10811.7.S1_at	BG837489	Glycine-rich protein	-	7e-3	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.19293.1.S1_at	CO531959	hypothetical protein LOC100193769	-	9e-4	At3g46550	SOS5 (salt overly sensitive 5)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.19195.1.S1_at	AY105514.1	hypothetical protein LOC100274054	-	1e-2	At2g24450	FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.9519.1.A1_at	AY107523.1	hypothetical protein LOC100193889	-	9e-7	At2g25670	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.9519.1.A1_a_at	AY107523.1	hypothetical protein LOC100193889	-	9e-7	At2g25670	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-3	44	Arabidopsis thaliana	At5g34930	833436	arogenate dehydrogenase	F:binding, prephenate dehydrogenase (NADP+) activity, catalytic activity;P:tyrosine biosynthetic process, metabolic process;C:unknown;BOPAFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	34	Glycine max	PsAffx.psMA002xM12f_s_at	PsAffx.psMA002xM12f	-	-	2e+1	At5g64680	unknown protein	C.G.	S.X.	Please select
0.12	2e-11	69	Hordeum vulgare	Contig8636_at	Contig8636	-	-	2e-3	At1g15710	prephenate dehydrogenase family protein	C.G.	S.X.	Please select
0.42	1e-139	498	Oryza sativa	Os06g0542200	AK058589.1	-	Prephenate dehydrogenase domain containing protein	2e-1	At3g62670	ARR20 (ARABIDOPSIS RESPONSE REGULATOR 20)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-3	44	Populus trichocarpa	PtpAffx.216798.1.S1_at	pmrna31817	arogenate dehydrogenase	-	7e-40	At5g34930	arogenate dehydrogenase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	2e-87	323	Triticum aestivum	TaAffx.64478.1.A1_at	CD914133	-	-	2e+0	At4g04110	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please select
0.03	7e-1	34	Vitis vinifera	1610900_at	CF516848	hypothetical LOC100244581	-	2e-1	At1g78480	prenyltransferase/squalene oxidase repeat-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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