Gene omics information

Query gene ID	Zm.13669.1.S1_x_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	Zm.13669.1.S1_x_at	AY107043.1	-	-	2e-1	At3g26420	ATRZ-1A	S.X.	H.G.	Please select
0.80	94.0	Zm.18516.1.A1_x_at	CO526437	-	-	2e+0	At5g55570	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.6402.3.S1_a_at	AI770444	DELLA protein DWARF8 /// dwarf plant9	-	8e-1	At5g42635	glycine-rich protein	S.X.	H.G.	Please select
0.57	75.1	Zm.5578.2.S1_a_at	BM380773	hypothetical protein LOC100193656	-	1e-4	At5g48335	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.6804.2.A1_at	CK347487	hypothetical protein LOC100217058	-	1e-38	At1g29310	P-P-bond-hydrolysis-driven protein transmembrane transporter	S.X.	H.G.	Please select
0.50	65.7	Zm.18376.1.A1_at	AI615179	hypothetical protein LOC100274438	-	2e-22	At4g02630	protein kinase family protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.284.1.A1_at	AI670415	-	-	1e+1	At3g53990	universal stress protein (USP) family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.4970.1.A1_at	CF627302	NAD-dependent dyhydrogenase, Gfo/Idh/MocA family	-	9e-5	At3g20790	oxidoreductase family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.5645.1.A1_at	AI629785	-	-	2e-6	At5g24710	-	S.X.	H.G.	Please select
0.38	44.2	Zm.9082.2.S1_at	BQ619513	-	-	3e-10	At2g25070	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.4	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	2e-159	559	Zm.13669.1.A1_at	AY107043.1	-	-	2e-1	At3g26420	ATRZ-1A	C.G.	S.X.	Please select
0.45	6e-61	232	Zm.13669.2.A1_at	BM350396	-	-	2e-9	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.45	6e-61	232	Zm.13669.2.A1_a_at	BM350396	-	-	2e-9	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.35	1e-18	91	Zm.3405.1.A1_at	AI737775	-	-	4e-4	At2g30940	protein kinase family protein	C.G.	S.X.	Please select
0.05	4e-6	50	Zm.5412.1.A1_at	CF635537	hypothetical protein LOC100280167	-	3e-6	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7704.1.A1_at	BM079575	hypothetical protein LOC100278612	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.6127.1.A1_a_at	AY110233.1	26S proteasome non-ATPase regulatory subunit 10	-	1e-9	At2g03430	ankyrin repeat family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.6127.1.S1_at	AY110233.1	-	-	1e-9	At2g03430	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.409.1.S1_at	U17695.1	cell wall invertase1	-	3e-1	At5g39170	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At3g26420	822246	ATRZ-1A	Zinc finger-containing glycine-rich RNA-binding protein. Cold-inducible. Contributes to the enhancement of freezing tolerance.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	1e-2	40	Glycine max	Gma.11892.1.A1_at	CD487688	-	-	3e-4	At1g01540	protein kinase family protein	C.G.	S.X.	Please select
0.14	2e-11	67	Hordeum vulgare	Contig14557_at	Contig14557	-	-	2e-22	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.07	1e-6	54	Oryza sativa	Os.16240.1.A1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-2	38	Populus trichocarpa	PtpAffx.221599.1.S1_at	pmrna38566	hypothetical protein	-	4e-1	At4g02630	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	7e-10	63	Triticum aestivum	Ta.21659.1.A1_at	CA697894	-	-	2e-9	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.04	1e-2	38	Vitis vinifera	1610530_at	CB971103	hypothetical protein LOC100243696	-	7e-34	At4g02630	protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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