Gene omics information

Query gene ID	Zm.13661.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.13661.1.A1_at	AY107142.1	-	-	2e+0	At4g25710	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.1079.4.S1_x_at	AY109373.1	-	-	2e-2	At5g14740	CA2 (CARBONIC ANHYDRASE 2)	S.X.	H.G.	Please select
0.67	85.8	Zm.17605.1.S1_at	CK368440	-	-	4e-1	At1g03457	RNA-binding protein, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.2986.1.A1_at	AF056326.1	low phytic acid1	-	4e-105	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.6468.1.A1_at	AI692046	hypothetical protein LOC100277167	-	1e-3	At1g14440	AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31)	S.X.	H.G.	Please select
0.47	59.9	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	S.X.	H.G.	Please select
0.38	44.2	Zm.12511.1.S1_at	AW062063	hypothetical protein LOC100276976	-	5e+0	At5g53110	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.2	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
8.8	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1360	Zm.13661.1.S1_at	BG836258	-	-	2e+0	At4g25710	kelch repeat-containing F-box family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.7972.1.S1_at	AY108891.1	-	-	2e-6	At2g33740	CUTA	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.8816.1.S1_at	CA404105	hypothetical protein LOC100191764	-	1e-24	At3g56310	alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Zm.5741.2.A1_at	BM074874	Hypothetical protein LOC100191775	-	4e+0	At5g46940	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4043.1.S1_at	AW091252	-	-	3e-10	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4086.1.A1_at	AI834525	-	-	9e-1	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.3302.1.A1_at	AY110608.1	hypothetical protein LOC100276576	-	5e-1	At5g04150	BHLH101	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.19277.1.A1_at	CO533311	hypothetical protein LOC100273292	-	2e-3	At1g18010	-	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.16807.1.A1_at	AY104666.1	hypothetical protein LOC100272422	-	5e-21	At3g55200	splicing factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At4g25710	828676	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMABO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	36	Glycine max	GmaAffx.58405.1.S1_at	BE802822	-	-	2e-5	At2g40730	HEAT repeat-containing protein	C.G.	S.X.	Please select
0.19	2e-13	75	Hordeum vulgare	rbaal9k07_at	rbaal9k07	-	-	1e+0	At5g06380	unknown protein	C.G.	S.X.	Please select
0.10	2e-29	131	Oryza sativa	OsAffx.28288.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.212062.1.S1_at	pmrna23671	hypothetical protein	-	1e-4	At2g48040	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	3e-26	119	Triticum aestivum	Ta.30901.1.S1_at	CN012647	-	-	1e+0	At3g43260	-	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1616187_at	CB343719	hypothetical protein LOC100244812	-	4e+0	At3g42050	vacuolar ATP synthase subunit H family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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