Gene omics information

Query gene ID	Zm.13658.1.A1_at
Gene name	hypothetical protein LOC100193262
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.13658.1.A1_at	AY107148.1	hypothetical protein LOC100193262	-	1e+0	At3g50350	unknown protein	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.714.1.S1_at	AI739758	-	-	1e+1	At5g66930	unknown protein	S.X.	H.G.	Please select
0.71	88.2	Zm.4853.1.S1_at	CD439703	-	-	2e-1	At2g45070	SEC61 BETA	S.X.	H.G.	Please select
0.61	79.5	Zm.13975.1.A1_at	CK985455	carbonyl reductase 3	-	6e-1	At4g20880	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)	S.X.	H.G.	Please select
0.55	71.6	Zm.4194.1.A1_at	AI861230	hypothetical protein LOC100276018	-	3e+0	At1g71180	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	S.X.	H.G.	Please select
0.29	28.1	Zm.17816.2.S1_a_at	CK144883	tRNA pseudouridine synthase family protein	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.9	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Zm.16264.1.S1_at	CF244527	hypothetical protein LOC100191674	-	3e-3	At5g16120	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.3840.1.S1_at	AY105198.1	apospory-associated protein C	-	3e-6	At5g57330	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.16829.2.S1_at	AY105706.1	hypothetical protein LOC100277102	-	5e-4	At4g33985	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.15540.1.S1_at	CD219351	hypothetical protein LOC100277347	-	1e-2	At1g27390	TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12520.1.S1_at	CO522221	hypothetical protein LOC100193148	-	2e-6	At4g34840	ATMTN2	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.302.1.A1_at	AI670435	-	-	8e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.302.1.S1_at	AI670435	-	-	8e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.623.1.A1_at	AF342810.1	NOD26-like membrane integral protein ZmNIP2-3	-	6e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.601.1.A1_at	AF326485.1	NOD26-like membrane intrinsic protein2	-	7e-1	At3g06750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At3g50350	824197	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	GmaAffx.47831.1.S1_at	CA783653	-	-	8e-1	At3g14970	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	2e-4	46	Hordeum vulgare	Contig12442_at	Contig12442	-	-	3e+0	At5g26220	ChaC-like family protein	C.G.	S.X.	Please select
0.15	3e-40	167	Oryza sativa	Os03g0135400	AK100737.1	-	Cyclin-like F-box domain containing protein	2e-2	At2g17020	F-box family protein (FBL10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.35209.1.S1_at	BU810187	-	-	8e+0	At3g18870	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	6e+0	32	Triticum aestivum	TaAffx.25948.1.S1_at	CA693937	-	-	1e-1	At2g43350	ATGPX3 (GLUTATHIONE PEROXIDASE 3)	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1619766_at	CF513933	-	-	2e+0	At1g77765	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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