CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.13620.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 77.8 Zm.13620.1.A1_at CK369896 - - 8e-6 At2g37550 AGD7 S.X. H.G.
0.83 95.6 Zm.16843.1.S1_at AI978092 - - 2e-47 At1g50370 serine/threonine protein phosphatase, putative S.X. H.G.
0.77 92.1 Zm.3135.1.S1_at CD981826 catalytic/ protein phosphatase type 2C - 2e-13 At1g47380 protein phosphatase 2C-related / PP2C-related S.X. H.G.
0.77 92.1 Zm.17572.2.S1_at CF972387 heat- and acid-stable phosphoprotein - 3e-8 At5g46020 unknown protein S.X. H.G.
0.67 85.8 Zm.2163.1.S1_at AY105593.1 - - 2e-4 At3g59400 GUN4 S.X. H.G.
0.42 51.3 Zm.9984.1.A1_at CO529085 Hypothetical protein LOC100217031 - 4e-4 At1g65000 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 97.0 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.8 96.6 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.5 96.3 GSM206304 Upper pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.4 96.2 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.3 96.1 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.2 96.0 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.7 95.4 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 36 Zm.18031.1.A1_at CK985574 - - 9e-2 At1g59800 cullin-related C.G. S.X.
0.01 3e+0 32 Zm.6572.1.A1_at AY104423.1 - - 8e-75 At2g32730 26S proteasome regulatory subunit, putative C.G. S.X.
0.01 3e+0 32 Zm.5229.1.A1_at CO519750 ATP-dependent transporter ycf16 - 4e-24 At3g10670 ATNAP7 C.G. S.X.
0.01 3e+0 32 Zm.4586.1.A1_at AW499317 - - 4e-2 At2g06420 unknown protein C.G. S.X.
0.01 3e+0 32 Zm.4589.1.A1_at CA401701 Protein kinase-like - 4e-31 At3g59110 protein kinase family protein C.G. S.X.
0.01 3e+0 32 Zm.3645.1.A1_at CF244256 glutamine amidotransferase subunit pdxT - 1e-5 At5g60540 PDX2 (PYRIDOXINE BIOSYNTHESIS 2) C.G. S.X.
0.02 3e+0 32 Zm.3195.1.S1_at BM347458 60S ribosomal protein L38 - 1e-7 At2g43460 60S ribosomal protein L38 (RPL38A) C.G. S.X.
0.02 3e+0 32 Zm.15860.1.A1_at BM073859 - - 5e+0 At2g17180 zinc finger (C2H2 type) family protein C.G. S.X.
0.02 1e+1 30 ZmAffx.962.1.S1_at AI833777 - - 3e-22 At1g64680 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 8e-6 52 Arabidopsis thaliana At2g37550 818331 AGD7 A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. - - - C.G. S.X.
0.08 2e-4 48 Glycine max GmaAffx.7014.1.S1_at BI469035 - - 7e-12 At2g37550 AGD7 C.G. S.X.
0.32 1e-92 339 Hordeum vulgare Contig4778_at Contig4778 - - 6e-8 At3g53710 AGD6 C.G. S.X.
0.39 2e-109 397 Oryza sativa Os03g0278400 AK070052.1 - ADP ribosylation GTPase-like protein (Fragment) 3e-7 At2g37550 AGD7 C.G. S.X.
0.05 6e-1 36 Populus trichocarpa Ptp.6163.2.S1_s_at CF234204 hypothetical protein - 9e-24 At3g53710 AGD6 C.G. S.X.
0.43 6e-93 341 Triticum aestivum Ta.2718.2.S1_a_at CK168482 - - 9e-9 At3g53710 AGD6 C.G. S.X.
0.03 9e-3 40 Vitis vinifera 1609980_a_at CA818363 spermine synthase - 4e+0 At5g53120 SPDS3 (SPERMIDINE SYNTHASE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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