Gene omics information

Query gene ID	Zm.13616.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.0	Zm.13616.1.S1_at	AY107497.1	-	-	2e+0	At4g25315	Expressed protein	S.X.	H.G.	Please select
0.75	90.8	Zm.2805.1.A1_at	AW352682	hypothetical protein LOC100274443	-	5e+0	At4g13266	unknown protein	S.X.	H.G.	Please select
0.74	90.3	Zm.18157.1.A1_at	CO533028	-	-	2e-1	At4g20290	unknown protein	S.X.	H.G.	Please select
0.74	90.3	ZmAffx.105.1.S1_at	AI665537	-	-	3e+0	At4g20000	VQ motif-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.11787.1.A1_a_at	BM380772	-	-	6e+0	At5g17523	-	S.X.	H.G.	Please select
0.63	81.1	ZmAffx.901.1.A1_at	AI770894	-	-	1e+1	At5g47455	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.5813.1.A1_at	CF056763	hypothetical protein LOC100191474	-	8e-32	At5g55310	TOP1BETA (DNA TOPOISOMERASE 1 BETA)	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.89.1.A1_at	AI665353	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	S.X.	H.G.	Please select
0.33	36.0	Zm.15937.1.A1_at	CO520791	-	-	5e+0	At3g25200	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.4	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	1324	Zm.13616.1.A1_at	AY107497.1	senescence-associated protein	-	2e+0	At4g25315	Expressed protein	C.G.	S.X.	Please select
0.11	2e-32	139	Zm.18298.1.A1_at	CO531061	senescence-associated protein	-	1e+0	At3g54130	josephin family protein	C.G.	S.X.	Please select
0.05	8e-7	54	Zm.1425.1.S1_at	BM380501	senescence-associated protein DH	-	3e-9	At2g23810	TET8 (TETRASPANIN8)	C.G.	S.X.	Please select
0.03	4e-2	38	ZmAffx.199.1.A1_at	AI668491	-	-	7e-1	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	C.G.	S.X.	Please select
0.03	4e-2	38	ZmAffx.199.1.S1_at	AI668491	-	-	7e-1	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.6973.1.S1_at	AY109828.1	hypothetical protein AY109828	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.01	4e-2	38	Zm.3752.1.S1_at	BM336170	pyridoxal kinase	-	2e-14	At5g37850	SOS4 (SALT OVERLY SENSITIVE 4)	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.12266.1.S1_at	BM382546	hypothetical protein LOC100194012	-	2e-3	At3g17365	catalytic/ methyltransferase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	34	Arabidopsis thaliana	At4g25315	2745726	Expressed protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	PsAffx.psZS008xB06f_s_at	PsAffx.psZS008xB06f	-	-	8e-4	At5g28640	AN3 (ANGUSTIFOLIA 3)	C.G.	S.X.	Please select
0.19	7e-69	260	Hordeum vulgare	Contig6728_at	Contig6728	-	-	6e-1	At5g23030	TET12 (TETRASPANIN12)	C.G.	S.X.	Please select
0.21	2e-72	274	Oryza sativa	Os05g0122800	AK068516.1	-	CD9/CD37/CD63 antigen family protein	7e-1	At3g50550	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e+0	34	Populus trichocarpa	PtpAffx.90554.1.S1_at	CK092560	hypothetical protein	-	4e+0	At5g03790	HB51	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	1e-75	284	Triticum aestivum	Ta.25548.2.S1_at	BE213352	-	-	5e-1	At3g50550	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1608305_at	CF415367	hypothetical protein LOC100258034	-	5e-3	At3g23090	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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