Gene omics information

Query gene ID	Zm.13610.1.A1_at
Gene name	LOL3
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.13610.1.A1_at	AY107563.1	LOL3	-	5e-1	At4g03540	integral membrane family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.3247.1.A1_at	AY109731.1	-	-	1e-52	At1g44900	ATP binding / DNA binding / DNA-dependent ATPase	S.X.	H.G.	Please select
0.10	4.6	Zm.663.1.S1_at	AF318075.1	cis-zeatin O-glucosyltransferase1	-	7e-1	At5g59580	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	S.X.	H.G.	Please select
0.07	2.9	Zm.6557.1.S1_at	CF635193	-	-	4e-34	At1g10290	ADL6 (DYNAMIN-LIKE PROTEIN 6)	S.X.	H.G.	Please select
0.04	1.5	Zm.13670.1.A1_at	AY107037.1	hypothetical protein LOC100276497	-	3e-3	At5g34930	arogenate dehydrogenase	S.X.	H.G.	Please select
0.02	0.7	Zm.82.1.S1_at	X57276.1	colored plant1	-	2e-2	At1g63650	EGL3 (ENHANCER OF GLABRA 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.3	98.7	GSM202400	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep4	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
11.8	98.6	GSM202401	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep4	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
11.0	98.5	GSM202405	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep5	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
9.8	98.3	GSM202404	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep5	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
9.6	98.3	GSM202409	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
8.5	98.1	GSM258173	B73 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
8.1	98.0	GSM202408	Zmet2 study 11-day seedling aerial tissue genotype B73 Rep6	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type
8.0	98.0	GSM202282	B73 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
7.9	97.9	GSM258191	B73 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
6.2	97.4	GSM202413	Zmet2 study 11-day seedling aerial tissue genotype B73 zmet2-m1 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	4e-15	81	Zm.18453.1.A1_at	CO523307	LOL3	-	5e+0	At2g28700	AGL46 (AGAMOUS-LIKE 46)	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.535.1.S1_at	AF318579.1	hypothetical LOC542493	-	7e-2	At2g20570	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.2136.1.S1_at	AW282383	hypothetical protein LOC100192761	-	5e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.6759.1.A1_at	CD974454	peptide transporter PTR2	-	2e+0	At5g46050	PTR3 (PEPTIDE TRANSPORTER 3)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.662.1.S1_at	AF262623.1	FDR3	-	8e+0	At2g45630	oxidoreductase family protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.5424.1.A1_at	AY107275.1	-	-	1e+0	At5g35475	-	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.5424.1.S1_at	AY107275.1	hypothetical protein LOC100275571	-	1e+0	At5g35475	-	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.3498.1.A1_a_at	CK367906	metallothionein1	-	2e+0	At5g64690	neurofilament triplet H protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At4g03540	825651	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.CL456Contig1_at	PsAffx.CL456Contig1	-	-	2e+0	At3g50260	CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)	C.G.	S.X.	Please select
0.35	4e-83	307	Hordeum vulgare	Contig2281_at	Contig2281	-	-	1e+1	At4g01516	unknown protein	C.G.	S.X.	Please select
0.41	4e-80	299	Oryza sativa	Os03g0388900	CB681614	-	Caspase, p20 subunit domain containing protein	8e-1	At1g79040	PSBR (photosystem II subunit R)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.88246.1.A1_at	CV274895	-	-	1e+0	At3g63088	RTFL14 (ROTUNDIFOLIA LIKE 14)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.56	0	761	Triticum aestivum	TaAffx.31122.1.S1_at	CA627423	-	-	4e+0	At5g28615	-	C.G.	S.X.	Please select
0.03	6e-1	34	Vitis vinifera	1615698_at	BQ792803	-	-	3e+0	At1g17350	auxin-induced-related / indole-3-acetic acid induced-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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