Gene omics information

Query gene ID	Zm.13606.1.A1_at
Gene name	hypothetical protein LOC100274041
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.13606.1.A1_at	AY107609.1	hypothetical protein LOC100274041	-	5e+0	At3g03776	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1295.1.S1_s_at	40794996-25	-	-	2e+0	At4g04470	PMP22	S.X.	H.G.	Please select
0.60	77.8	Zm.3109.1.A1_at	CK370523	Hypothetical protein LOC100194150	-	2e-1	At1g08710	F-box family protein	S.X.	H.G.	Please select
0.36	41.3	Zm.9014.2.A1_at	AI714470	PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2	-	2e-68	At2g42500	PP2A-4	S.X.	H.G.	Please select
0.33	36.0	Zm.11630.1.A1_at	BM379429	-	-	4e+0	At4g13570	HTA4	S.X.	H.G.	Please select
0.29	28.1	ZmAffx.462.1.A1_at	AI677305	-	-	3e+0	At4g22870	leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.3	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	1e-57	222	Zm.1740.1.A1_at	CD441960	hypothetical protein LOC100191260	-	1e+0	At3g03870	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.8328.1.A1_at	BI596217	hypothetical protein LOC100276055 /// hypothetical protein LOC100277949	-	4e-1	At5g40630	ubiquitin family protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.4204.1.S1_a_at	AY103547.1	-	-	2e-26	At2g24200	cytosol aminopeptidase	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.17348.1.S1_at	CO526603	hypothetical protein LOC100273637	-	8e-1	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.949.1.A1_at	CF624182	-	-	1e-1	At5g15970	KIN2	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.949.1.A1_s_at	CF624182	hypothetical protein LOC100280024	-	1e-1	At5g15970	KIN2	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.7847.1.A1_at	BM080149	-	-	1e+0	At3g27416	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.14591.3.S1_a_at	CK370424	triosephosphate isomerase, cytosolic	-	3e-7	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.14591.3.S1_x_at	CK370424	triosephosphate isomerase, cytosolic	-	3e-7	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At3g03776	821149	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	PsAffx.psMY011iB01r_at	PsAffx.psMY011iB01r	-	-	3e-1	At1g59860	17.6 kDa class I heat shock protein (HSP17.6A-CI)	C.G.	S.X.	Please select
0.07	2e-4	46	Hordeum vulgare	Contig17507_at	Contig17507	-	-	2e+0	At3g05350	aminopeptidase/ hydrolase	C.G.	S.X.	Please select
0.11	7e-16	85	Oryza sativa	Os08g0383700	AF464902.1	-	Repressor protein	4e-18	At5g23090	NF-YB13 (NUCLEAR FACTOR Y, SUBUNIT B13)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.3389.1.S1_at	DN502766	-	-	2e-4	At2g35230	VQ motif-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	34	Triticum aestivum	TaAffx.16096.1.A1_at	BQ168637	-	-	8e-1	At1g55160	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1617689_at	CF372853	-	-	1e+0	At3g22660	rRNA processing protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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