Gene omics information

Query gene ID	Zm.1359.1.S1_at
Gene name	male gametophyte-specific2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.1359.1.S1_at	L20139.1	male gametophyte-specific2	-	3e-6	At3g01270	pectate lyase family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.8551.1.A1_at	BM333970	-	-	2e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	S.X.	H.G.	Please select
0.56	74.4	Zm.16049.2.A1_at	CF042888	-	-	3e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	S.X.	H.G.	Please select
0.48	61.3	Zm.7976.1.S1_at	BM080696	hypothetical protein LOC100217261	-	2e-46	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	S.X.	H.G.	Please select
0.40	48.5	Zm.17581.1.S1_at	CK371654	hypothetical protein LOC100216838	-	2e+0	At1g68540	oxidoreductase family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.5960.1.A1_at	AI665953	hypothetical protein LOC100277799	-	1e+1	At5g65158	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.2	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.5	99.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.1	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	3e-38	159	Zm.10482.1.S1_at	AW330949	hypothetical protein LOC100280002	-	9e-1	At1g04680	pectate lyase family protein	C.G.	S.X.	Please select
0.04	3e-1	36	ZmAffx.854.1.A1_at	AI770665	-	-	8e-7	At5g48900	pectate lyase family protein	C.G.	S.X.	Please select
0.04	3e-1	36	ZmAffx.854.1.S1_at	AI770665	hypothetical protein LOC100273705	-	5e-8	At4g24780	pectate lyase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.4474.2.S1_a_at	AY108450.1	hypothetical protein LOC100279979 /// protein phosphatase 2C	-	3e+0	At5g46720	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.4474.2.A1_at	AY108450.1	-	-	3e+0	At5g46720	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.4474.1.S1_at	CA402734	hypothetical protein LOC100279979	-	3e+0	At5g46720	-	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.3173.1.A1_at	CF019257	pectate lyase 4	-	6e-5	At3g09540	pectate lyase family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.15685.1.A1_at	CF628027	-	-	2e-1	At4g14020	rapid alkalinization factor (RALF) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.15685.2.S1_at	BG841369	-	-	5e+0	At5g52200	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-6	54	Arabidopsis thaliana	At3g01270	821142	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	PsAffx.C104000022_at	PsAffx.C104000022	-	-	6e+0	At3g12545	lipid transfer protein-related	C.G.	S.X.	Please select
0.16	5e-12	71	Hordeum vulgare	Contig11004_at	Contig11004	-	-	3e-22	At3g07010	pectate lyase family protein	C.G.	S.X.	Please select
0.40	2e-122	440	Oryza sativa	Os02g0214400	AK101009.1	-	Pectate lyase homolog (EC 4.2.2.2) (Fragment)	4e+0	At4g13710	pectate lyase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	1e-15	85	Populus trichocarpa	PtpAffx.208136.1.S1_at	pmrna16167	hypothetical protein	-	7e-7	At4g13710	pectate lyase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	3e-46	186	Triticum aestivum	Ta.25997.1.A1_at	CD454482	-	-	5e-1	At3g01270	pectate lyase family protein	C.G.	S.X.	Please select
0.06	2e-1	36	Vitis vinifera	1607945_at	AF243475.1	pectate lyase	-	1e-39	At1g67750	pectate lyase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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