CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.13584.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.56 74.4 Zm.13584.1.A1_at AY107853.1 - - 1e-72 At1g21640 NADK2 S.X. H.G.
0.26 22.7 Zm.3134.2.A1_at AI770607 - - 8e-1 At3g23000 CIPK7 (CBL-INTERACTING PROTEIN KINASE 7) S.X. H.G.
0.22 16.9 Zm.7370.1.A1_at BM382341 beta-expansin 1a - 5e-1 At1g20220 nucleic acid binding S.X. H.G.
0.11 5.3 Zm.8456.1.A1_at BM335025 hypothetical protein LOC100273451 - 5e+0 At5g14020 - S.X. H.G.
0.07 2.9 Zm.11871.1.A1_at BM381412 - - 1e+0 At5g55140 ribosomal protein L30 family protein S.X. H.G.
0.06 2.3 Zm.17352.1.A1_at CF636500 - - 4e+0 At5g53030 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.4 99.2 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6 99.1 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8 99.0 GSM320446 protocol: mRNA - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3 98.9 GSM320442 protocol: mRNA - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0 98.8 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8 98.8 GSM320444 protocol: mRNA - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8 98.7 GSM320441 protocol: mRNA - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM253270 ZM_4.5d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
8.3 98.0 GSM253269 ZM_4.5d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 36 Zm.5418.1.A1_at CO524535 hypothetical protein LOC100216929 - 2e-4 At1g63980 D111/G-patch domain-containing protein C.G. S.X.
0.01 8e-1 34 Zm.7466.1.S1_at AY108612.1 integral membrane protein like - 1e-15 At1g06890 transporter-related C.G. S.X.
0.03 3e+0 32 ZmAffx.202.1.A1_at AI670151 - - 1e+1 Atmg01080 - C.G. S.X.
0.03 3e+0 32 ZmAffx.202.1.S1_at AI670151 - - 1e+1 Atmg01080 - C.G. S.X.
0.02 3e+0 32 Zm.9569.1.A1_at AY103610.1 polyadenylate-binding protein 2 - 5e-7 At5g65260 polyadenylate-binding protein family protein / PABP family protein C.G. S.X.
0.01 3e+0 32 Zm.5132.1.A1_at AY105555.1 calcium lipid binding protein-like - 7e-1 At1g15320 unknown protein C.G. S.X.
0.01 3e+0 32 Zm.4529.1.A1_a_at CF624627 lipid binding protein - 4e-3 At5g40490 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.02 3e+0 32 Zm.16965.1.A1_at CF650305 reticulon-4-interacting protein 1 - 1e-7 At3g15090 oxidoreductase, zinc-binding dehydrogenase family protein C.G. S.X.
0.03 3e+0 32 Zm.15205.1.A1_at BM350765 - - 2e+1 At5g57860 ubiquitin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-72 274 Arabidopsis thaliana At1g21640 838766 NADK2 Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin. - - - C.G. S.X.
0.36 5e-57 222 Glycine max GmaAffx.11881.1.S1_at AW395448 - - 9e-102 At1g21640 NADK2 C.G. S.X.
0.30 2e-69 262 Hordeum vulgare Contig14957_at Contig14957 - - 4e-7 At1g21640 NADK2 C.G. S.X.
0.31 0 777 Oryza sativa Os11g0191400 AK101259.1 - ATP-NAD/AcoX kinase family protein 7e-43 At1g21640 NADK2 C.G. S.X.
0.40 1e-54 214 Populus trichocarpa Ptp.2741.1.S1_s_at DN490824 hypothetical protein - 1e-94 At1g21640 NADK2 C.G. S.X.
0.33 2e-52 206 Triticum aestivum TaAffx.133606.1.A1_at BE418174 - - 2e+1 At5g05650 - C.G. S.X.
0.32 3e-67 254 Vitis vinifera 1613485_at CF206102.1 - - 3e-84 At1g21640 NADK2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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