Gene omics information

Query gene ID	Zm.13581.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.13581.1.A1_at	BM379129	-	-	2e-4	At5g65460	kinesin motor protein-related	S.X.	H.G.	Please select
0.83	95.6	Zm.18369.1.S1_at	BQ618986	hypothetical protein LOC100193825 /// PCO071075 protein	-	9e-1	At3g53000	AtPP2-A15 (Phloem protein 2-A15)	S.X.	H.G.	Please select
0.83	95.6	Zm.15705.1.A1_at	CD440189	-	-	1e-4	At4g38270	GAUT3 (Galacturonosyltransferase 3)	S.X.	H.G.	Please select
0.50	65.7	Zm.218.1.A1_a_at	AB016802.1	ABA stimulation MAP kinase	-	6e-42	At2g43790	ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)	S.X.	H.G.	Please select
0.50	65.7	Zm.7941.1.A1_at	BM080529	-	-	1e+0	At3g50040	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.5995.2.S1_a_at	AI666102	-	-	2e+0	At4g14385	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	98.7	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
10.1	98.4	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
8.2	98.0	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.1	98.0	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	40	Zm.10819.1.S1_at	AI812223	hypothetical protein LOC100273706	-	1e-5	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.490.1.S1_a_at	AF216853.1	coatomer protein2	-	9e-25	At2g34840	coatomer protein epsilon subunit family protein / COPE family protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.2497.1.S1_at	AY107480.1	hypothetical protein LOC100272917	-	3e-55	At4g12400	stress-inducible protein, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.8016.1.A1_at	BI992016	hypothetical protein LOC100275155	-	3e-1	At3g57950	unknown protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.7056.7.S1_at	CF021546	hypothetical protein LOC100193141	-	3e-5	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5573.1.A1_at	BM080792	Methionine synthase	-	4e-121	At5g17920	ATMS1	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5451.1.S1_at	AI621979	-	-	8e-4	At4g36970	remorin family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.5048.3.S1_x_at	AY103537.1	hypothetical protein LOC100279926	-	3e-57	At4g24190	SHD (SHEPHERD)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.3545.1.A1_s_at	BM267030	translation initiation factor 5A /// translation initiation factor 5A	-	4e-20	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e-4	48	Arabidopsis thaliana	At5g65460	836671	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOFPBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	7e-14	79	Glycine max	GmaAffx.13732.2.S1_at	BI469818	-	-	1e-27	At5g65460	kinesin motor protein-related	C.G.	S.X.	Please select
0.56	2e-107	389	Hordeum vulgare	Contig17831_at	Contig17831	-	-	5e-4	At5g10470	kinesin motor protein-related	C.G.	S.X.	Please select
0.41	1e-74	282	Oryza sativa	Os06g0217600	AK071349.1	-	Hypothetical protein	1e-7	At5g10470	kinesin motor protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e-6	54	Populus trichocarpa	PtpAffx.56970.1.A1_at	CV243661	-	-	2e-9	At5g65460	kinesin motor protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	2e-176	619	Triticum aestivum	Ta.4721.1.S1_at	BJ240050	-	-	9e-7	At5g10470	kinesin motor protein-related	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1611377_at	CF209819	hypothetical protein LOC100263077	-	7e-5	At5g65910	BSD domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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