Gene omics information

Query gene ID	Zm.13558.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.81	94.3	Zm.13558.1.A1_at	BQ163517	-	-	1e-3	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	S.X.	H.G.	Please select
0.69	86.5	Zm.3892.5.A1_at	BM079634	60S ribosomal protein L28	-	6e-7	At2g19730	60S ribosomal protein L28 (RPL28A)	S.X.	H.G.	Please select
0.53	69.1	Zm.14068.1.S1_at	AI920492	vacuolar protein-sorting protein 45	-	2e-23	At1g77140	VPS45 (VACUOLAR PROTEIN SORTING 45)	S.X.	H.G.	Please select
0.42	51.3	Zm.10798.1.A1_at	CF003582	Hypothetical protein LOC100191405	-	1e-2	At1g26930	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.42	51.3	Zm.1829.1.S1_at	AY103809.1	-	-	3e+0	At5g17710	EMB1241 (embryo defective 1241)	S.X.	H.G.	Please select
0.41	49.7	Zm.16065.2.A1_s_at	BM080549	Histone H2B.3	-	8e-15	At1g07790	HTB1	S.X.	H.G.	Please select
0.38	44.2	ZmAffx.706.1.A1_at	AI738209	-	-	8e-1	At1g23590	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.1866.1.A1_at	AW498013	-	-	5e-7	At4g11270	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.35	38.9	Zm.18531.1.A1_at	BE575145	hypothetical protein LOC100192889	-	2e+0	At4g21280	oxygen-evolving enhancer protein 3, chloroplast, putative (PSBQ1) (PSBQ)	S.X.	H.G.	Please select
0.33	36.0	Zm.4541.1.S1_at	AY104176.1	hypothetical protein LOC100274427	-	5e-8	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.65	8e-179	624	Zm.1388.1.A1_at	CK827610	-	-	7e-6	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	C.G.	S.X.	Please select
0.08	6e-10	63	Zm.8997.1.A1_at	AY106532.1	hypothetical protein LOC100272754	-	2e-9	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	C.G.	S.X.	Please select
0.09	2e-6	52	Zm.16779.2.A1_at	BM075463	-	-	3e-11	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	C.G.	S.X.	Please select
0.10	3e-2	38	Zm.16779.1.A1_at	CF626512	hypothetical protein LOC100216924	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	C.G.	S.X.	Please select
0.10	3e-2	38	Zm.16779.1.A1_a_at	CF626512	hypothetical protein LOC100216924 /// hypothetical protein LOC100273958	-	2e-3	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	C.G.	S.X.	Please select
0.10	1e-1	36	Zm.16779.3.S1_at	AI691600	hypothetical protein LOC100273958	-	7e-6	At5g48810	CB5-D (CYTOCHROME B5 ISOFORM D)	C.G.	S.X.	Please select
0.03	5e-1	34	ZmAffx.669.1.A1_at	AI734376	ATPase III subunit	-	5e-2	At1g10100	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.8082.1.A1_at	BM072860	hypothetical protein LOC100280326	-	2e+0	At5g46020	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4978.1.A1_at	AW331789	patellin-1	-	1e-1	At5g37590	binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-3	44	Arabidopsis thaliana	At1g26340	839176	CB5-A (CYTOCHROME B5 ISOFORM A)	encodes a member of the cytochromes b5 family of proteins that localizes to the outer envelope of the chloroplast. The C-terminal portion of the protein appears to be capable of inserting into a plant microsomal membrane in vitro.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-4	48	Glycine max	Gma.627.1.S1_at	BI427162	-	-	1e-3	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	C.G.	S.X.	Please select
0.10	1e-8	59	Hordeum vulgare	Contig2284_at	Contig2284	-	-	5e-13	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	C.G.	S.X.	Please select
0.20	2e-22	107	Oryza sativa	Os.21935.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-2	40	Populus trichocarpa	PtpAffx.5159.3.S1_at	AJ780094	hypothetical protein	-	4e-16	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.67	1e-89	329	Triticum aestivum	TaAffx.143995.23.A1_at	AY188332	-	-	8e-4	At1g26340	CB5-A (CYTOCHROME B5 ISOFORM A)	C.G.	S.X.	Please select
0.10	4e-1	34	Vitis vinifera	1614327_at	CB036097	hypothetical protein LOC100248225	-	1e-10	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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