Gene omics information

Query gene ID	Zm.13556.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.13556.1.A1_at	AY108151.1	-	-	9e-1	At5g66490	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.2016.1.S1_at	AW566149	zinc finger, C3HC4 type family protein	-	2e+0	At5g51195	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.7620.1.A1_at	CF629426	hypothetical protein LOC100279978	-	2e-3	At2g24010	scpl23 (serine carboxypeptidase-like 23)	S.X.	H.G.	Please select
0.41	49.7	Zm.18258.1.A1_at	CN845261	hypothetical protein LOC100193725	-	3e-6	At2g38610	KH domain-containing protein	S.X.	H.G.	Please select
0.40	48.5	Zm.10479.1.S1_at	BQ486450	-	-	5e+0	At5g13990	ATEXO70C2 (exocyst subunit EXO70 family protein C2)	S.X.	H.G.	Please select
0.38	44.2	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	S.X.	H.G.	Please select
0.33	36.0	Zm.9102.1.A1_at	BM333481	-	-	2e-2	At2g38110	GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6)	S.X.	H.G.	Please select
0.30	29.8	Zm.9814.1.A1_at	BM351590	-	-	4e+0	At5g26840	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.2378.1.A1_at	BQ485596	-	-	8e-10	At1g70750	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.2	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
18.7	99.2	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
17.5	99.1	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
16.8	99.1	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
16.7	99.1	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
15.6	99.0	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
15.6	99.0	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
15.4	99.0	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
15.2	98.9	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
15.0	98.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	874	Zm.13556.1.S1_at	AY108151.1	-	-	9e-1	At5g66490	unknown protein	C.G.	S.X.	Please select
0.04	7e-3	40	Zm.7272.1.S1_at	BI430568	hypothetical protein LOC100275279	-	1e+0	At3g28590	unknown protein	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.4373.1.S1_at	AY061964.1	fertilization independent endosperm1	-	2e-5	At3g20740	FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.14805.1.A1_at	BM380633	hypothetical protein LOC100280247	-	3e-6	At1g01720	ATAF1	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.14504.1.A1_at	AY107583.1	hypothetical protein LOC100273087	-	7e+0	At3g20395	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.9327.1.A1_at	BM349135	-	-	2e-10	At3g16630	KINESIN-13A	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.8489.1.A1_at	BQ538173	hypothetical protein LOC100273569	-	2e-23	At3g59660	C2 domain-containing protein / GRAM domain-containing protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.7380.1.S1_at	BM078135	hypothetical protein LOC100280093	-	6e-1	At1g51070	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.19195.1.S1_at	AY105514.1	hypothetical protein LOC100274054	-	1e-2	At2g24450	FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-1	34	Arabidopsis thaliana	At5g66490	836781	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-1	36	Glycine max	HgAffx.8575.1.S1_at	CB379926	-	-	5e+0	At4g33130	-	C.G.	S.X.	Please select
0.05	3e-2	38	Hordeum vulgare	HW02N10u_at	HW02N10u	-	-	3e+0	At3g45150	TCP16 (TCP domain protein 16)	C.G.	S.X.	Please select
0.04	8e-3	42	Oryza sativa	Os.6618.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.219571.1.S1_at	pmrna35524	hypothetical protein	-	1e+1	At5g45973	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-2	40	Triticum aestivum	Ta.16015.1.S1_at	BG314229	-	-	7e+0	At1g11850	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1608867_s_at	CF200773.1	hypothetical protein LOC100261444	-	3e-15	At4g26230	60S ribosomal protein L31 (RPL31B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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