Gene omics information

Query gene ID	Zm.13525.1.A1_at
Gene name	12-oxo-phytodienoic acid reductase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.13525.1.A1_at	CB278252	12-oxo-phytodienoic acid reductase	-	2e+1	At5g02220	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.4204.1.S1_a_at	AY103547.1	-	-	2e-26	At2g24200	cytosol aminopeptidase	S.X.	H.G.	Please select
0.57	75.1	Zm.16907.1.S1_at	AI691771	-	-	4e-50	At3g18000	XPL1 (XIPOTL 1)	S.X.	H.G.	Please select
0.52	67.3	Zm.19155.2.A1_x_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.758.1.A1_at	AI746000	hypothetical protein LOC100273671	-	3e-3	At4g22260	IM (IMMUTANS)	S.X.	H.G.	Please select
0.46	58.4	Zm.2903.1.A1_at	CF019919	hypothetical protein LOC100274564	-	9e-8	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	S.X.	H.G.	Please select
0.46	58.4	Zm.2072.1.S1_at	BG842253	-	-	7e-1	At5g14260	SET domain-containing protein	S.X.	H.G.	Please select
0.41	49.7	Zm.4132.1.A1_at	CO529833	hypothetical protein LOC100276765	-	4e-14	At1g16520	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.7069.1.S1_at	AF036891.2	plastid starch synthase I precursor	-	3e-4	At5g24300	SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.5	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	1223	Zm.13525.1.S1_at	AY108381.1	12-oxo-phytodienoic acid reductase	-	2e+1	At5g02220	unknown protein	C.G.	S.X.	Please select
0.28	6e-81	299	Zm.13677.1.A1_at	CO519348	12-oxo-phytodienoic acid reductase	-	6e+0	At1g06400	ARA-2	C.G.	S.X.	Please select
0.03	6e-1	34	Zm.8766.1.A1_at	BM349453	-	-	1e+0	At5g58360	ATOFP3	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.847.1.S1_at	L00973.1	hypothetical protein LOC100274400	-	1e-1	At1g02360	chitinase, putative	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.6601.1.S1_at	BI361125	-	-	6e-30	At3g18190	chaperonin, putative	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.3331.1.A1_at	AI374564	carbohydrate transporter/ sugar porter/ transporter	-	3e-1	At3g43790	ZIFL2 (ZINC INDUCED FACILITATOR-like 2)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.2349.1.A1_at	AW355959	GMP synthase	-	2e+0	At1g75550	glycine-rich protein	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.13938.1.A1_at	CB350917	-	-	4e-117	At1g50250	FTSH1 (FtsH protease 1)	C.G.	S.X.	Please select
0.01	6e-1	34	Zm.12777.1.A1_at	CA402980	-	-	3e+0	At3g06780	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+1	30	Arabidopsis thaliana	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	PsAffx.psMC012xH07f_s_at	PsAffx.psMC012xH07f	-	-	5e-1	At1g31090	F-box family protein	C.G.	S.X.	Please select
0.16	3e-43	174	Hordeum vulgare	Contig9556_at	Contig9556	-	-	2e-4	At2g06050	OPR3 (OPDA-REDUCTASE 3)	C.G.	S.X.	Please select
0.12	4e-33	143	Oryza sativa	Os08g0459600	AK071203.1	-	12-oxophytodienoate reductase 3 (EC 1.3.1.42)	2e-7	At2g06050	OPR3 (OPDA-REDUCTASE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-1	38	Populus trichocarpa	PtpAffx.44935.1.A1_at	CV268304	hypothetical protein	-	2e-19	At2g06050	OPR3 (OPDA-REDUCTASE 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	2e-43	176	Triticum aestivum	Ta.8433.1.S1_at	CD873985	-	-	2e-4	At2g06050	OPR3 (OPDA-REDUCTASE 3)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621276_at	CB343088	-	-	5e-1	At4g23110	insulin-like growth factor binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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