CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.13513.1.S1_at

Gene name hypothetical protein LOC100193945

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.72 88.6 Zm.13513.1.S1_at CO528571 hypothetical protein LOC100193945 - 2e-3 At2g18030 peptide methionine sulfoxide reductase family protein S.X. H.G.
0.65 82.1 Zm.12402.1.S1_at AY109060.1 hypothetical protein LOC100193926 - 3e-7 At4g33000 CBL10 (CALCINEURIN B-LIKE 10) S.X. H.G.
0.53 69.1 ZmAffx.47.1.S1_at AI664954 - - 8e-1 At2g37030 auxin-responsive family protein S.X. H.G.
0.49 61.9 Zm.4765.1.A1_at AW461093 hypothetical protein LOC100193642 - 1e-4 At2g33470 GLTP1 (glycolipid transfer protein 1) S.X. H.G.
0.48 61.3 Zm.10332.1.A1_at BQ048110 - - 2e+0 At3g28990 unknown protein S.X. H.G.
0.47 59.9 ZmAffx.1038.1.S1_at AI881773 hypothetical protein LOC100273522 - 3e+0 At5g57290 60S acidic ribosomal protein P3 (RPP3B) S.X. H.G.
0.45 56.4 Zm.10216.1.A1_at CD440291 hypothetical protein LOC100276703 - 7e-9 At3g05570 unknown protein S.X. H.G.
0.44 55.7 ZmAffx.220.1.A1_at AI670228 - - 3e+0 At4g14890 ferredoxin family protein S.X. H.G.
0.41 49.7 Zm.15937.1.A1_at CO520791 - - 5e+0 At3g25200 unknown protein S.X. H.G.
0.40 48.5 Zm.15817.1.A1_at D87044.1 protein kinase catalytic domain - 3e-8 At5g04870 CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.8 97.6 GSM206320 Lower pulvinus 15 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.5 97.5 GSM206319 Lower pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.9 97.3 GSM290554 WS2 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.9 96.7 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.6 96.4 GSM290555 CCR mutant M1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.5 96.3 GSM290553 WS1 with array type maize from Affymetrix GSE11531 Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.9 95.7 GSM206290 Upper pulvinus 15 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.6 95.2 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 36 Zm.995.1.A1_at CF040767 - - 2e+0 At5g26080 proline-rich family protein C.G. S.X.
0.02 3e-1 36 Zm.976.1.S1_at AY107864.1 hypothetical protein LOC100193876 - 8e+0 At5g63530 ATFP3 C.G. S.X.
0.02 3e-1 36 Zm.978.1.A1_at CF627012 - - 1e-1 At3g16800 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 3e-1 36 Zm.9307.1.A1_at AY105170.1 stromal cell-derived factor 2 - 6e-1 At3g42310 unknown protein C.G. S.X.
0.03 3e-1 36 Zm.9365.1.A1_at BM268346 transposon protein - 1e-1 At1g29520 AWPM-19-like membrane family protein C.G. S.X.
0.02 3e-1 36 Zm.8683.1.A1_at BM266358 hypothetical protein LOC100273977 - 4e+0 At5g52605 - C.G. S.X.
0.02 3e-1 36 Zm.824.1.A1_a_at CF625698 - - 4e-2 At4g14000 unknown protein C.G. S.X.
0.02 3e-1 36 Zm.772.1.S1_at BM351247 - - 2e-6 At1g32080 membrane protein, putative C.G. S.X.
0.02 3e-1 36 Zm.750.1.A1_at CD999376 hypothetical protein LOC100191573 /// hypothetical protein LOC100276148 - 4e-2 At3g47920 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-3 44 Arabidopsis thaliana At2g18030 816315 peptide methionine sulfoxide reductase family protein F:peptide-methionine-(S)-S-oxide reductase activity, oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor;P:protein modification process, protein metabolic process;C:endomembrane system;BOMPFAV - - - C.G. S.X.
0.10 4e-24 113 Glycine max Gma.11890.2.S1_at BQ452998 - - 3e-13 At2g18030 peptide methionine sulfoxide reductase family protein C.G. S.X.
0.41 3e-118 424 Hordeum vulgare Contig18586_at Contig18586 - - 3e-2 At2g18030 peptide methionine sulfoxide reductase family protein C.G. S.X.
0.46 7e-144 511 Oryza sativa Os06g0138100 AK069328.1 - Methionine sulfoxide reductase A domain containingprotein 2e-4 At2g18030 peptide methionine sulfoxide reductase family protein C.G. S.X.
0.09 6e-8 59 Populus trichocarpa PtpAffx.54675.1.A1_at CV280283 methionine sulfoxide reductase type - 7e-25 At2g18030 peptide methionine sulfoxide reductase family protein C.G. S.X.
0.53 2e-170 599 Triticum aestivum TaAffx.8604.1.S1_at CA622940 - - 7e-5 At2g18030 peptide methionine sulfoxide reductase family protein C.G. S.X.
0.10 3e-3 42 Vitis vinifera 1615285_at CF214268 hypothetical protein LOC100241959 - 7e-22 At2g18030 peptide methionine sulfoxide reductase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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