Gene omics information

Query gene ID	Zm.13483.1.S1_at
Gene name	Hypothetical protein LOC100192840
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	55.7	Zm.13483.1.S1_at	CO528023	Hypothetical protein LOC100192840	-	2e+0	At3g29970	germination protein-related	S.X.	H.G.	Please select
0.50	65.7	Zm.3498.1.A1_a_at	CK367906	metallothionein1	-	2e+0	At5g64690	neurofilament triplet H protein-related	S.X.	H.G.	Please select
0.42	51.3	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	S.X.	H.G.	Please select
0.36	41.3	Zm.2887.1.A1_at	CF041808	hypothetical protein LOC100193083	-	6e-10	At1g26940	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	S.X.	H.G.	Please select
0.22	16.9	Zm.2940.1.A1_at	AW360572	-	-	4e-5	At1g56500	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.19	12.8	ZmAffx.61.1.S1_at	AI665105	-	-	9e-13	At5g62840	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.5	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1818	Zm.13483.1.A1_at	CO528022	hypothetical protein LOC100192840	-	2e+0	At3g29970	germination protein-related	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.4484.2.A1_at	AY108719.1	hypothetical protein LOC100272812	-	5e-11	At3g62770	AtATG18a	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.4484.1.A1_at	CF632963	-	-	9e-3	At3g62770	AtATG18a	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.9015.1.A1_a_at	CF634204	-	-	4e-93	At5g50920	CLPC1	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.17821.1.S1_at	CD961542	myo-inositol kinase	-	1e-2	At5g58730	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.02	1e+1	30	ZmAffx.978.1.A1_at	AI833953	-	-	6e-23	Atcg00770	-	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.9678.1.A1_at	BM335903	-	-	1e+0	At5g02190	PCS1 (PROMOTION OF CELL SURVIVAL 1)	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.9523.1.S1_at	CO534636	-	-	9e-2	At4g17615	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.777.1.S1_a_at	CD442368	hypothetical protein LOC100272376	-	4e-8	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g29970	822700	germination protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	GmaAffx.7773.1.S1_at	BE191329	-	-	2e-4	At4g38060	unknown protein	C.G.	S.X.	Please select
0.04	2e-4	46	Hordeum vulgare	Contig14536_at	Contig14536	-	-	2e+0	At3g04500	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.18	2e-63	244	Oryza sativa	Os08g0341700	AK120904.1	-	Phosphatidylinositol transfer-like protein II	1e-7	At4g34580	COW1 (CAN OF WORMS1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.212264.1.S1_s_at	pmrna24045	hypothetical protein	-	1e+0	At2g20725	CAAX amino terminal protease family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	2e-28	127	Triticum aestivum	Ta.9791.1.S1_at	CA651818	-	-	1e+0	At3g56740	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616252_at	CF202709.1	hypothetical protein LOC100252560	-	5e-3	At1g23140	C2 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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