Gene omics information

Query gene ID	Zm.13456.2.A1_at
Gene name	Hypothetical protein LOC100194201
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.13456.2.A1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	S.X.	H.G.	Please select
0.44	55.7	Zm.5245.1.A1_at	CF003837	-	-	7e+0	At5g66607	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.18012.1.A1_at	CK827313	-	-	2e-3	At5g48950	thioesterase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.4	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.8	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.4	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	3e-98	357	Zm.13456.2.S1_x_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select
0.34	3e-98	357	Zm.13456.2.S1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select
0.11	2e-34	145	Zm.13456.1.S1_x_at	AY109199.1	hypothetical protein LOC100194201	-	2e+0	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.11	2e-34	145	Zm.13456.1.S1_at	AY109199.1	hypothetical protein LOC100194201	-	2e+0	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.2373.1.A1_at	CF632228	hypothetical protein LOC100191352	-	3e-3	At5g06370	NC domain-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.11828.1.A1_at	BM381087	-	-	9e-1	At5g53680	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.201.1.A1_at	L16798.1	class I acidic chitinase	-	8e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.201.1.S1_at	L16798.1	class I acidic chitinase	-	8e-3	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.03	8e+0	30	ZmAffx.612.1.A1_at	AI715040	-	-	1e+1	At5g62040	brother of FT and TFL1 protein (BFT)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e+0	32	Arabidopsis thaliana	At3g50520	824216	phosphoglycerate/bisphosphoglycerate mutase family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	PsAffx.C297000008_at	PsAffx.C297000008	-	-	7e-3	At5g25080	-	C.G.	S.X.	Please select
0.02	9e+0	30	Hordeum vulgare	Contig16183_s_at	Contig16183	-	-	1e-4	At2g14720	VSR-2	C.G.	S.X.	Please select
0.03	9e+0	32	Oryza sativa	Os03g0700900	9631.m04816	-	-	3e+0	At1g07175	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.87159.1.A1_at	BP929829	hypothetical protein	-	2e-1	At5g47060	senescence-associated protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	Ta.6423.2.S1_at	BJ207857	-	-	6e-4	At5g27720	emb1644 (embryo defective 1644)	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1621135_at	CB345767	-	-	2e-1	At1g68240	transcription factor	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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