CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.13431.1.S1_at

Gene name hypothetical LOC542282

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.78 92.5 Zm.13431.1.S1_at AY110841.1 hypothetical LOC542282 - 2e+0 At3g54940 - S.X. H.G.
0.87 96.4 Zm.17753.1.S1_at CK371208 Hypothetical protein LOC100192575 - 7e-1 At3g57950 unknown protein S.X. H.G.
0.80 94.0 Zm.13627.1.S1_at AY107420.1 - - 3e-1 At2g22200 AP2 domain-containing transcription factor S.X. H.G.
0.72 88.6 Zm.6588.1.A1_at BM080221 hypothetical protein LOC100192010 - 5e-23 At1g78630 emb1473 (embryo defective 1473) S.X. H.G.
0.64 81.7 Zm.6567.1.A1_at BM072999 - - 2e+0 At5g41030 TCP family transcription factor, putative S.X. H.G.
0.60 77.8 Zm.3518.1.A1_at BM337627 - - 1e+0 At2g22000 PROPEP6 (Elicitor peptide 6 precursor) S.X. H.G.
0.58 75.1 Zm.18877.1.A1_at CO529651 protein phosphatase 2C - 3e-1 At4g16580 catalytic S.X. H.G.
0.58 75.1 Zm.5850.1.A1_at CF623894 - - 2e-7 At4g04910 NSF (N-ethylmaleimide sensitive factor) S.X. H.G.
0.57 75.1 Zm.889.3.S1_at AI834601 - - 3e-4 At4g38740 ROC1 (ROTAMASE CYP 1) S.X. H.G.
0.50 65.7 Zm.11730.1.S1_at BM380273 hypothetical protein LOC100272845 - 2e-26 At4g38970 fructose-bisphosphate aldolase, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.4 99.7 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
21.6 99.4 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
17.7 99.1 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
17.4 99.1 GSM206302 Upper pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
17.0 99.1 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
16.9 99.1 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
16.1 99.0 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.5 98.6 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
11.1 98.5 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
10.5 98.4 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.88 0 1602 Zm.13431.1.A1_at AY110841.1 hypothetical LOC542282 - 2e+0 At3g54940 - C.G. S.X.
0.03 1e-11 69 Zm.5565.1.S2_at CF631185 hypothetical protein LOC100194102 - 9e-11 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.03 1e-11 69 Zm.5565.1.S1_at D45402.1 cysteine protease1 - 9e-11 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.03 5e-5 48 Zm.14983.2.A1_at AY109416.1 - - 3e-5 At5g27150 NHX1 (NA+/H+ EXCHANGER) C.G. S.X.
0.03 5e-5 48 Zm.14983.2.S1_at CO524096 - - 5e-10 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) C.G. S.X.
0.03 2e-4 46 Zm.9879.2.S1_at CA404875 vignain - 5e-5 At4g35350 XCP1 (XYLEM CYSTEINE PEPTIDASE 1) C.G. S.X.
0.05 2e-4 46 Zm.7736.1.S1_at AF019146.1 maize insect resistance2 - 4e-3 At2g34080 cysteine proteinase, putative C.G. S.X.
0.09 2e-4 46 Zm.2276.1.S1_at CO531514 thiol protease SEN102 - 3e+0 At1g61730 DNA-binding storekeeper protein-related C.G. S.X.
0.04 2e-4 46 Zm.12475.1.S1_at AW600588 - - 8e-1 At3g54940 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 34 Arabidopsis thaliana At3g54940 824659 - - - - - C.G. S.X.
0.04 3e+0 34 Glycine max PsAffx.CL2624Contig1_at PsAffx.CL2624Contig1 - - 5e+0 At3g26935 zinc finger (DHHC type) family protein C.G. S.X.
0.07 2e-5 50 Hordeum vulgare Contig6776_s_at Contig6776 - - 2e-3 At1g20850 XCP2 (xylem cysteine peptidase 2) C.G. S.X.
0.08 2e-5 52 Oryza sativa Os.8360.1.S1_at - - - 0 C.G. S.X.
0.05 6e-1 36 Populus trichocarpa PtpAffx.249.79.A1_at BP932784 hypothetical protein - 2e-14 At4g39090 RD19 (RESPONSIVE TO DEHYDRATION 19) C.G. S.X.
0.09 2e-9 63 Triticum aestivum Ta.5004.1.S1_at CA721837 - - 8e-3 At5g50260 cysteine proteinase, putative C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1608456_at CB971487 hypothetical protein LOC100250141 - 4e-14 At5g50260 cysteine proteinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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