Gene omics information

Query gene ID	Zm.13431.1.A1_at
Gene name	hypothetical LOC542282
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.13431.1.A1_at	AY110841.1	hypothetical LOC542282	-	2e+0	At3g54940	-	S.X.	H.G.	Please select
0.35	38.9	Zm.12402.1.S1_at	AY109060.1	hypothetical protein LOC100193926	-	3e-7	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	S.X.	H.G.	Please select
0.29	28.1	ZmAffx.1208.1.A1_at	BE186278	-	-	8e-1	At1g20580	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	S.X.	H.G.	Please select
0.22	16.9	Zm.10332.1.A1_at	BQ048110	-	-	2e+0	At3g28990	unknown protein	S.X.	H.G.	Please select
0.20	14.2	Zm.13513.1.S1_at	CO528571	hypothetical protein LOC100193945	-	2e-3	At2g18030	peptide methionine sulfoxide reductase family protein	S.X.	H.G.	Please select
0.09	4.0	ZmAffx.104.1.A1_at	AI665536	hypothetical protein LOC100273079	-	8e-1	At2g34980	SETH1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.2	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.9	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.3	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.3	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.1	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.1	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	1602	Zm.13431.1.S1_at	AY110841.1	hypothetical LOC542282	-	2e+0	At3g54940	-	C.G.	S.X.	Please select
0.03	1e-11	69	Zm.5565.1.S2_at	CF631185	hypothetical protein LOC100194102	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.03	1e-11	69	Zm.5565.1.S1_at	D45402.1	cysteine protease1	-	9e-11	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please select
0.03	5e-5	48	Zm.14983.2.A1_at	AY109416.1	-	-	3e-5	At5g27150	NHX1 (NA+/H+ EXCHANGER)	C.G.	S.X.	Please select
0.03	5e-5	48	Zm.14983.2.S1_at	CO524096	-	-	5e-10	At3g05030	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	C.G.	S.X.	Please select
0.03	2e-4	46	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	C.G.	S.X.	Please select
0.02	2e-4	46	Zm.7736.1.S1_at	AF019146.1	maize insect resistance2	-	4e-3	At2g34080	cysteine proteinase, putative	C.G.	S.X.	Please select
0.02	2e-4	46	Zm.2276.1.S1_at	CO531514	thiol protease SEN102	-	3e+0	At1g61730	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select
0.03	2e-4	46	Zm.12475.1.S1_at	AW600588	-	-	8e-1	At3g54940	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At3g54940	824659	-	-	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-4	46	Glycine max	PsAffx.CL729Contig1_at	PsAffx.CL729Contig1	-	-	2e+0	At2g05915	unknown protein	C.G.	S.X.	Please select
0.05	1e-6	54	Hordeum vulgare	Contig4887_s_at	Contig4887	-	-	8e-2	At2g45130	SPX3 (SPX DOMAIN GENE 3)	C.G.	S.X.	Please select
0.05	4e-6	54	Oryza sativa	Os09g0562700	AK108733.1	-	Pre-pro-TPE4A protein precursor	1e-1	At3g54940	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	6e-1	36	Populus trichocarpa	PtpAffx.249.79.A1_at	BP932784	hypothetical protein	-	2e-14	At4g39090	RD19 (RESPONSIVE TO DEHYDRATION 19)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-6	54	Triticum aestivum	Ta.5431.1.S1_x_at	CK192992	-	-	1e+1	Atmg01350	-	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1608456_at	CB971487	hypothetical protein LOC100250141	-	4e-14	At5g50260	cysteine proteinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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