Gene omics information

Query gene ID	Zm.1342.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.1342.1.S1_at	BG842254	-	-	4e-5	At1g23230	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.15437.1.S1_at	CD219447	hypothetical protein LOC100191830	-	6e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	S.X.	H.G.	Please select
0.60	77.8	Zm.13366.1.A1_a_at	CF634270	-	-	3e-1	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	S.X.	H.G.	Please select
0.57	75.1	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.834.1.A1_at	AI770566	-	-	8e-1	At1g54420	unknown protein	S.X.	H.G.	Please select
0.09	4.0	Zm.1316.1.A1_at	AY106193.1	hypothetical protein LOC100194245	-	1e-24	At5g61240	protein binding	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.6	98.1	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.6	96.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.0	95.8	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.0	95.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-1	34	Zm.4387.1.A1_at	CF627716	hypothetical protein LOC100191315	-	4e+0	At5g40590	DC1 domain-containing protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.7069.1.S1_at	AF036891.2	plastid starch synthase I precursor	-	3e-4	At5g24300	SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.560.1.A1_at	AF244700.1	glutathione transferase35	-	2e+0	At3g25160	ER lumen protein retaining receptor family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.11827.1.A1_at	BM381077	hypothetical protein LOC100192043	-	4e+0	At3g55820	-	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.10249.1.A1_at	BM497740	-	-	1e-1	At2g35460	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.968.1.A1_at	CF623311	GTP-binding protein PTD004	-	5e-27	At1g30580	GTP binding	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.8277.1.S1_at	BM073493	Granule bound starch synthase IIa precursor	-	2e-20	At1g32900	starch synthase, putative	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.8377.1.A1_at	CO527307	hypothetical protein LOC100276229	-	1e+0	At1g22010	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.774.1.S1_at	CF625446	hypothetical protein LOC100191508	-	2e-17	At4g14160	transport protein, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-5	50	Arabidopsis thaliana	At1g23230	838932	unknown protein	F:molecular_function unknown;P:response to salt stress;C:unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	2e-7	57	Glycine max	GmaAffx.85830.1.S1_at	AW569216	-	-	3e-26	At1g23230	unknown protein	C.G.	S.X.	Please select
0.31	2e-51	202	Hordeum vulgare	Contig12535_at	Contig12535	-	-	6e-1	At1g51360	DABB1 (DIMERIC A/B BARREL DOMAINS-PROTEIN 1)	C.G.	S.X.	Please select
0.13	5e-123	442	Oryza sativa	Os02g0732700	AK072905.1	-	Conserved hypothetical protein	3e-12	At1g23230	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-9	63	Populus trichocarpa	PtpAffx.208875.1.S1_at	pmrna17591	hypothetical protein	-	8e-2	At5g53870	plastocyanin-like domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	4e-91	335	Triticum aestivum	Ta.8353.1.S1_at	BJ306924	-	-	5e-6	At1g23230	unknown protein	C.G.	S.X.	Please select
0.12	5e-11	67	Vitis vinifera	1613122_at	CB978705	hypothetical protein LOC100262719	-	5e-19	At1g23230	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage