Gene omics information

Query gene ID	Zm.13403.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.13403.1.A1_at	AF457949.1	-	-	2e-2	At1g67640	lysine and histidine specific transporter, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.10657.1.S1_at	BQ538861	CHL - Zea mays Chloroplastic lipocalin	-	7e-3	At2g41010	ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA)	S.X.	H.G.	Please select
0.24	19.8	Zm.4835.1.A1_at	CA403328	hypothetical protein LOC100192885	-	6e-4	At3g02280	flavodoxin family protein	S.X.	H.G.	Please select
0.21	15.5	Zm.16174.1.A1_at	AY107459.1	IDP155 protein	-	9e-2	At1g43970	unknown protein	S.X.	H.G.	Please select
0.15	8.6	Zm.18065.1.A1_at	CK985885	-	-	2e+0	At4g29160	SNF7.1	S.X.	H.G.	Please select
0.08	3.4	Zm.3459.1.A1_at	AW455674	Pgr5 protein	-	4e-1	At3g17010	transcriptional factor B3 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.5	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.5	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1102	Zm.13403.1.S1_at	AF457949.1	-	-	2e-2	At1g67640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
1.00	0	1102	Zm.13403.1.S1_x_at	AF457949.1	-	-	2e-2	At1g67640	lysine and histidine specific transporter, putative	C.G.	S.X.	Please select
0.34	0	668	Zm.15307.1.A1_at	CF014037	-	-	2e-11	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.39	6e-84	309	Zm.17174.1.A1_at	CO531239	hypothetical protein LOC100273979	-	2e-6	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.08	9e-9	59	Zm.13228.1.S1_at	CA452580	LHT1	-	5e+0	At4g17585	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.19247.1.A1_at	CO520064	-	-	2e-3	At1g47670	amino acid transporter family protein	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.17178.1.A1_at	AB112936.1	plastidic 2-oxoglutarate/malate transporter	-	3e-10	At5g12860	DiT1 (dicarboxylate transporter 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7756.1.A1_at	BQ538566	hypothetical protein LOC100279912	-	1e+0	At1g28140	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6095.1.S1_at	CO530231	vacuolar proton pump homolog1	-	1e-96	At1g15690	AVP1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-2	40	Arabidopsis thaliana	At1g67640	843088	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity, amine transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-8	59	Glycine max	GmaAffx.48461.1.S1_at	AW396191	-	-	4e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.04	2e-6	52	Hordeum vulgare	Contig15915_at	Contig15915	-	-	2e-3	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.25	4e-79	295	Oryza sativa	Os08g0127100	AK065217.1	-	Lysine and histidine specific transporter	3e-19	At5g40780	LHT1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-3	44	Populus trichocarpa	PtpAffx.201013.1.S1_at	pmrna1989	lysine/histidine transporter	-	1e-21	At5g40780	LHT1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	1e-80	299	Triticum aestivum	Ta.12339.1.S1_s_at	BT009250.1	-	-	5e-15	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1618436_at	CD801488	hypothetical protein LOC100251351	-	9e-1	At4g03945	enzyme inhibitor/ pectinesterase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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