Gene omics information

Query gene ID	Zm.13400.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.13400.1.S1_at	AF457956.1	-	-	6e-1	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	S.X.	H.G.	Please select
0.83	95.6	Zm.1088.1.S1_at	CK144992	ATP synthase gamma chain	-	7e-1	At1g11170	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.3545.1.A1_s_at	BM267030	translation initiation factor 5A /// translation initiation factor 5A	-	4e-20	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	S.X.	H.G.	Please select
0.73	89.9	Zm.10879.1.S1_at	AY109037.1	peroxidase 24	-	5e-2	At5g58400	peroxidase, putative	S.X.	H.G.	Please select
0.71	88.2	Zm.2565.1.A1_at	AY112147.1	-	-	2e+0	At4g28050	TET7 (TETRASPANIN7)	S.X.	H.G.	Please select
0.71	88.2	Zm.13400.1.A1_at	AF457956.1	-	-	6e-1	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.7	99.8	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.8	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	640	Zm.13400.1.A1_at	AF457956.1	-	-	6e-1	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.198.2.A1_at	CD438193	-	-	6e-1	At3g13686	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.198.2.S1_at	CD438193	GLA1	-	6e-1	At3g13686	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.16246.1.S1_at	CF384546	-	-	2e+0	At3g43950	phosphotransferase, alcohol group as acceptor	C.G.	S.X.	Please select
0.03	4e+0	30	Zm.9216.1.A1_at	BM267379	hypothetical protein LOC100276794	-	9e-2	At5g44380	FAD-binding domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.8429.1.A1_at	BM341682	charged multivesicular body protein 5	-	2e-25	At5g04850	VPS60.2	C.G.	S.X.	Please select
0.04	4e+0	30	Zm.7012.8.A1_x_at	BU092758	ribosomal protein S8	-	1e-43	At5g59240	40S ribosomal protein S8 (RPS8B)	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.7012.5.A1_a_at	T18712	ribosomal protein S8	-	2e-53	At5g59240	40S ribosomal protein S8 (RPS8B)	C.G.	S.X.	Please select
0.04	4e+0	30	Zm.7012.8.S1_a_at	BU092758	Ribosomal protein S8	-	1e-43	At5g59240	40S ribosomal protein S8 (RPS8B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Arabidopsis thaliana	At4g32850	829421	nPAP (NUCLEAR POLY(A) POLYMERASE)	Encodes a nuclear poly(A) polymerase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	5e-33	141	Glycine max	GmaAffx.766.1.S1_at	BE059172	-	-	6e+0	At5g53720	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	2e+1	28	Hordeum vulgare	HVSMEn0017P13r2_at	HVSMEn0017P13r2	-	-	7e-1	At2g15830	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	30	Oryza sativa	Os10g0534300	9638.m03514	-	-	3e-1	At4g13345	MEE55 (maternal effect embryo arrest 55)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	8e-1	34	Populus trichocarpa	PtpAffx.95733.1.A1_at	CV235000	hypothetical protein	-	8e+0	At4g24974	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e-1	34	Triticum aestivum	Ta.1088.1.A1_at	BG908656	-	-	1e-2	At4g12280	copper amine oxidase family protein	C.G.	S.X.	Please select
0.05	3e+0	30	Vitis vinifera	1619929_at	CB975759	-	-	4e-1	At1g34910	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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