Gene omics information

Query gene ID	Zm.13400.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.13400.1.A1_at	AF457956.1	-	-	6e-1	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	S.X.	H.G.	Please select
0.91	99.0	Zm.134.1.S1_at	U31521.1	Zea AGAMOUS homolog2	-	5e-11	At2g42830	SHP2 (SHATTERPROOF 2)	S.X.	H.G.	Please select
0.91	99.0	Zm.2565.1.A1_at	AY112147.1	-	-	2e+0	At4g28050	TET7 (TETRASPANIN7)	S.X.	H.G.	Please select
0.83	95.6	Zm.2568.1.A1_a_at	BM079095	hypothetical protein LOC100276990	-	6e+0	At3g17070	peroxidase, putative	S.X.	H.G.	Please select
0.83	95.6	Zm.2569.1.A1_at	CF635472	agmatine coumaroyltransferase	-	7e+0	At4g27900	-	S.X.	H.G.	Please select
0.71	88.2	Zm.13400.1.S1_at	AF457956.1	-	-	6e-1	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.7	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.9	95.7	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.9	95.7	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM206294	Lower pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	640	Zm.13400.1.S1_at	AF457956.1	-	-	6e-1	At4g32850	nPAP (NUCLEAR POLY(A) POLYMERASE)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.198.2.A1_at	CD438193	-	-	6e-1	At3g13686	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.198.2.S1_at	CD438193	GLA1	-	6e-1	At3g13686	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.16246.1.S1_at	CF384546	-	-	2e+0	At3g43950	phosphotransferase, alcohol group as acceptor	C.G.	S.X.	Please select
0.03	4e+0	30	Zm.9216.1.A1_at	BM267379	hypothetical protein LOC100276794	-	9e-2	At5g44380	FAD-binding domain-containing protein	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.8429.1.A1_at	BM341682	charged multivesicular body protein 5	-	2e-25	At5g04850	VPS60.2	C.G.	S.X.	Please select
0.04	4e+0	30	Zm.7012.8.A1_x_at	BU092758	ribosomal protein S8	-	1e-43	At5g59240	40S ribosomal protein S8 (RPS8B)	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.7012.5.A1_a_at	T18712	ribosomal protein S8	-	2e-53	At5g59240	40S ribosomal protein S8 (RPS8B)	C.G.	S.X.	Please select
0.04	4e+0	30	Zm.7012.8.S1_a_at	BU092758	Ribosomal protein S8	-	1e-43	At5g59240	40S ribosomal protein S8 (RPS8B)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e-1	34	Arabidopsis thaliana	At4g32850	829421	nPAP (NUCLEAR POLY(A) POLYMERASE)	Encodes a nuclear poly(A) polymerase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.34	5e-33	141	Glycine max	GmaAffx.766.1.S1_at	BE059172	-	-	6e+0	At5g53720	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	2e+1	28	Hordeum vulgare	HVSMEn0017P13r2_at	HVSMEn0017P13r2	-	-	7e-1	At2g15830	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	30	Oryza sativa	Os10g0534300	9638.m03514	-	-	3e-1	At4g13345	MEE55 (maternal effect embryo arrest 55)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	8e-1	34	Populus trichocarpa	PtpAffx.95733.1.A1_at	CV235000	hypothetical protein	-	8e+0	At4g24974	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e-1	34	Triticum aestivum	Ta.1088.1.A1_at	BG908656	-	-	1e-2	At4g12280	copper amine oxidase family protein	C.G.	S.X.	Please select
0.05	3e+0	30	Vitis vinifera	1619929_at	CB975759	-	-	4e-1	At1g34910	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage