Gene omics information

Query gene ID	Zm.13390.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.13390.1.A1_at	AF457982.1	-	-	4e+0	At3g01328	-	S.X.	H.G.	Please select
0.33	36.0	Zm.18304.1.S1_at	CO522721	-	-	6e-14	At5g49900	catalytic/ glucosylceramidase	S.X.	H.G.	Please select
0.27	24.6	Zm.12244.2.A1_x_at	AW267221	-	-	9e-1	At5g46940	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.23	18.6	Zm.3461.2.A1_a_at	AI966852	RuBisCo subunit binding-protein beta subunit	-	1e-55	At3g13470	chaperonin, putative	S.X.	H.G.	Please select
0.21	15.5	Zm.4682.1.S1_at	AI737946	acyl-desaturase	-	1e-1	At5g16230	acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative	S.X.	H.G.	Please select
0.09	4.0	Zm.12074.1.A1_at	BM417762	actin-related protein 2/3 complex subunit 4	-	5e-13	At4g14147	ARPC4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.6	99.8	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1088	Zm.13390.1.S1_at	AF457982.1	-	-	4e+0	At3g01328	-	C.G.	S.X.	Please select
0.10	3e-27	121	Zm.59.1.S1_at	L34847.1	IAA-glu synthetase	-	2e-1	At4g15280	UGT71B5 (UDP-GLUCOSYL TRANSFERASE 71B5)	C.G.	S.X.	Please select
0.05	5e-13	73	Zm.5826.1.A1_at	CA402658	-	-	9e-1	At2g43820	UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2)	C.G.	S.X.	Please select
0.10	5e-13	73	Zm.1889.1.A1_at	CO520833	cytokinin-N-glucosyltransferase 1	-	1e-3	At3g55700	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.04	8e-6	50	Zm.5441.1.S1_at	CO528962	hypothetical protein LOC100274317	-	3e+0	At3g23130	SUP (SUPERMAN)	C.G.	S.X.	Please select
0.06	8e-6	50	Zm.18979.1.A1_at	CO535045	-	-	2e-2	At2g31790	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.06	5e-4	44	Zm.3216.1.S1_at	AJ006537	limonoid UDP-glucosyltransferase	-	1e-1	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.5382.1.A1_at	CO519926	Hypothetical protein LOC100192877	-	9e-1	At1g73000	-	C.G.	S.X.	Please select
0.02	2e-3	42	Zm.5382.1.S1_at	CO521542	hypothetical protein LOC100192877	-	9e-1	At1g73000	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At3g01328	5007974	-	Encodes a ECA1 gametogenesis related family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	7e-12	71	Glycine max	GmaAffx.59500.3.S1_at	BG790368	-	-	2e+0	At5g57181	unknown protein	C.G.	S.X.	Please select
0.12	4e-5	48	Hordeum vulgare	HVSMEm0012J18r2_at	HVSMEm0012J18r2	-	-	3e-1	At3g03000	calmodulin, putative	C.G.	S.X.	Please select
0.42	2e-40	167	Oryza sativa	Os.10546.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.217438.1.S1_at	pmrna32693	hypothetical protein	-	2e+0	At2g44620	MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-11	69	Triticum aestivum	Ta.19294.1.A1_at	CD490459	-	-	3e-1	At3g55710	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1622655_at	CD717815	-	-	5e+0	At5g58110	ATPase activator/ chaperone binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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