Gene omics information

Query gene ID	Zm.13366.1.A1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.13366.1.A1_a_at	CF634270	-	-	3e-1	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	S.X.	H.G.	Please select
0.61	79.5	Zm.1342.1.S1_at	BG842254	-	-	4e-5	At1g23230	unknown protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.856.1.A1_at	AI770686	-	-	8e-1	At5g06870	PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)	S.X.	H.G.	Please select
0.40	48.5	Zm.1316.1.A1_at	AY106193.1	hypothetical protein LOC100194245	-	1e-24	At5g61240	protein binding	S.X.	H.G.	Please select
0.18	11.6	Zm.17656.1.S1_at	CK369512	-	-	5e+0	At4g08151	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.8	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	4e-97	353	Zm.5558.3.S1_at	BQ539339	RNA binding protein	-	6e-2	At5g48650	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.03	1e-4	46	Zm.8888.1.A1_at	BG837427	hypothetical protein LOC100274770	-	6e-6	At4g37830	cytochrome c oxidase-related	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.4853.1.S1_at	CD439703	-	-	2e-1	At2g45070	SEC61 BETA	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.3233.1.S1_at	BM379256	hypothetical protein LOC100273932	-	7e-1	At5g45630	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.4698.1.A1_at	AW120236	-	-	1e-11	At4g34270	TIP41-like family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.14347.1.A1_at	AY106522.1	-	-	1e-1	At4g25730	FtsJ-like methyltransferase family protein	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.14347.1.S1_at	AY106522.1	-	-	2e+0	At3g29590	AT5MAT	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.13633.1.A1_at	AY107370.1	hypothetical protein LOC100276617	-	1e-34	At4g38130	HD1 (HISTONE DEACETYLASE 1)	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.9238.1.A1_at	CO533275	-	-	5e-2	At2g23320	WRKY15	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At3g45960	823739	ATEXLA3 (arabidopsis thaliana expansin-like a3)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e-1	36	Glycine max	GmaAffx.91019.1.S1_at	CF806744	-	-	7e-11	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	C.G.	S.X.	Please select
0.24	4e-48	190	Hordeum vulgare	Contig5356_s_at	Contig5356	-	-	9e-1	At4g11870	unknown protein	C.G.	S.X.	Please select
0.09	9e-34	145	Oryza sativa	Os02g0131700	AK103571.1	-	Nuclear transport factor 2 domain containingprotein	6e-5	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.88591.1.A1_s_at	CV259964	-	-	8e-1	At2g46190	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	3e-140	498	Triticum aestivum	Ta.17495.1.S1_at	CA621291	-	-	3e-1	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	C.G.	S.X.	Please select
0.04	6e+0	30	Vitis vinifera	1622271_at	BM437605	-	-	1e-7	At5g11090	serine-rich protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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