Gene omics information

Query gene ID	Zm.13325.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.13325.1.S1_at	BQ279643	-	-	3e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	S.X.	H.G.	Please select
0.80	94.0	Zm.4338.3.S1_at	AW000126	-	-	3e+0	At5g27170	unknown protein	S.X.	H.G.	Please select
0.77	92.1	Zm.4350.1.A1_at	AW091239	-	-	1e+0	At5g49334	unknown protein	S.X.	H.G.	Please select
0.77	92.1	Zm.1402.1.S1_at	BF729248	-	-	4e+0	At1g29040	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.5771.1.A1_at	BM336016	tobamovirus multiplication 3	-	5e-25	At1g14530	THH1 (TOM THREE HOMOLOG 1)	S.X.	H.G.	Please select
0.32	33.4	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.4	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	34	Zm.3889.2.A1_a_at	BM335204	hypothetical protein LOC100194114	-	9e-12	At3g55440	TPI (TRIOSEPHOSPHATE ISOMERASE)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.8602.1.A1_at	CK369559	hypothetical protein LOC100193490	-	3e+0	At3g28680	prolylcarboxypeptidase-related	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.1925.1.A1_at	CO530733	uridylate kinase	-	1e-70	At3g18680	aspartate/glutamate/uridylate kinase family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.12748.1.S1_at	AW066809	tubby-like protein	-	7e-8	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.714.1.A1_at	U66105.1	phospholipid transfer protein	-	6e+0	At3g48490	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5464.1.A1_at	AI622048	hypothetical protein LOC100272690	-	2e+0	At1g62790	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5300.1.A1_at	AI734564	-	-	5e-9	At5g01020	protein kinase family protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.4634.1.A1_at	AI737447	-	-	4e+0	At5g43260	chaperone protein dnaJ-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At4g27140	828822	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	F:lipid binding, nutrient reservoir activity;P:lipid transport;C:endomembrane system;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.15745.1.A1_s_at	CD396231	-	-	2e-1	At1g62850	-	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	EBro08_SQ008_H06_at	EBro08_SQ008_H06	-	-	9e-1	At3g47836	unknown protein	C.G.	S.X.	Please select
0.06	1e+0	34	Oryza sativa	OsAffx.21038.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e-1	36	Populus trichocarpa	PtpAffx.222809.1.S1_at	pmrna40474	hypothetical protein	-	7e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	TaAffx.86838.1.S1_at	CA599894	-	-	1e+0	At3g24590	PLSP1 (plastidic type I signal peptidase 1)	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1613069_at	CF405371	-	-	1e+0	At4g03270	CYCD6	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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