Gene omics information

Query gene ID	Zm.13322.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.13322.1.A1_at	BM895136	-	-	1e+0	At1g52855	unknown protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.219.1.A1_at	AI670227	-	-	3e+0	At3g30430	F-box family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.7016.1.A1_a_at	AY103859.1	hypothetical protein LOC100275203 /// hypothetical protein LOC100276238	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	S.X.	H.G.	Please select
0.53	69.1	Zm.17248.3.A1_x_at	AW057073	hypothetical protein LOC100280404	-	7e-11	At5g37510	EMB1467 (embryo defective 1467)	S.X.	H.G.	Please select
0.36	41.3	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	S.X.	H.G.	Please select
0.25	21.3	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.5	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.0	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	34	Zm.3354.1.A1_at	CF024139	-	-	7e+0	At4g17340	TIP2	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.19248.1.S1_at	CO530787	Hypothetical protein LOC100193820	-	7e-1	At3g47850	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.14587.1.A1_at	AY108589.1	hypothetical protein LOC100279451	-	3e+0	At2g14095	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.14587.1.S1_at	AY108589.1	-	-	3e+0	At2g14095	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.13499.1.S1_at	AY108734.1	oxidoreductase	-	1e-5	At5g18900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.13198.2.A1_a_at	CA400950	-	-	4e+0	At3g43432	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.13198.2.A1_at	CA400950	-	-	4e+0	At3g43432	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9351.1.A1_a_at	CF630860	transport protein particle component, Bet3 containing protein /// transport protein particle component, Bet3 containing protein /// transport protein particle component, Bet3 containing protein	-	4e-20	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.9351.1.A1_at	CF630860	transport protein particle component, Bet3 containing protein	-	4e-20	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At1g52855	2745824	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e+0	34	Glycine max	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select
0.13	2e-10	65	Hordeum vulgare	Contig9387_at	Contig9387	-	-	3e+0	At3g58450	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.08	1e-14	81	Oryza sativa	Os12g0527800	AK106543.1	-	Zn-finger, RING domain containing protein	1e-9	At3g08020	protein binding / zinc ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e-1	38	Populus trichocarpa	PtpAffx.121323.1.A1_at	CV244235	-	-	6e+0	At1g12530	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	4e-13	75	Triticum aestivum	Ta.9802.1.A1_at	BJ232036	-	-	1e+0	At1g23050	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1620455_at	CF204565.1	-	-	3e-1	At4g25434	ATNUDT10 (Arabidopsis thaliana Nudix hydrolase homolog 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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