Gene omics information

Query gene ID	Zm.13283.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.13283.1.S1_at	CA826693	-	-	4e+0	At1g04778	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.11955.1.A1_at	BM382121	-	-	4e+0	At1g49030	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.1967.1.A1_at	BG836522	pathogenesis-related protein 10 /// pathogenesis-related protein 1	-	1e-23	At1g77180	chromatin protein family	S.X.	H.G.	Please select
0.33	36.0	Zm.11663.1.A1_at	CO531620	hypothetical protein LOC100273622	-	2e+0	At4g28170	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.11710.1.A1_at	BM380117	-	-	1e+0	At5g15853	unknown protein	S.X.	H.G.	Please select
0.13	6.8	Zm.1506.1.A1_at	X82184.1	defence-related protein	-	1e-1	At3g04720	PR4 (PATHOGENESIS-RELATED 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
48.1	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.3	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.9	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	4e-20	97	Zm.3876.1.S1_at	AY111960.1	hypothetical protein LOC100278092	-	5e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.9101.1.A1_at	BM348554	hypothetical protein LOC100279567	-	2e+0	At5g11990	proline-rich family protein	C.G.	S.X.	Please select
0.05	3e-2	38	Zm.11586.1.A1_at	BM379136	-	-	6e+0	Atmg00280	-	C.G.	S.X.	Please select
0.04	1e-1	36	ZmAffx.1142.1.S1_at	AW399873	-	-	2e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.04	1e-1	36	ZmAffx.1142.1.A1_at	AW399873	-	-	2e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.16853.1.A1_at	AY103985.1	-	-	2e-18	At5g05920	DHS (DEOXYHYPUSINE SYNTHASE)	C.G.	S.X.	Please select
0.04	2e+0	32	ZmAffx.857.1.A1_at	AI770690	-	-	3e+0	At4g23496	SP1L5 (SPIRAL1-LIKE5)	C.G.	S.X.	Please select
0.04	2e+0	32	ZmAffx.857.1.S1_at	AI770690	flavonol 4-sulfotransferase	-	3e+0	At4g23496	SP1L5 (SPIRAL1-LIKE5)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.535.1.S1_at	AF318579.1	hypothetical LOC542493	-	7e-2	At2g20570	GPRI1 (GBF'S PRO-RICH REGION-INTERACTING FACTOR 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At1g04778	5007663	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.4724.1.S1_at	CD748700	-	-	1e+0	At1g76340	integral membrane family protein	C.G.	S.X.	Please select
0.04	3e-2	38	Hordeum vulgare	Contig21705_at	Contig21705	-	-	1e+1	At5g51780	basix helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os01g0159500	AU090656	-	Hypothetical protein	9e+0	At4g14385	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.5296.1.A1_at	CV254320	hypothetical protein	-	3e-14	At4g22330	ATCES1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-2	40	Triticum aestivum	Ta.3925.1.S1_at	BJ246460	-	-	1e+1	At5g51780	basix helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1615246_at	CF371892	hypothetical protein LOC100247907	-	7e-1	At4g28640	IAA11 (INDOLE-3-ACETIC ACID INDUCIBLE 11)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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