Gene omics information

Query gene ID	Zm.13232.1.S1_at
Gene name	tyrosine/DOPA decarboxylase 2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.13232.1.S1_at	CA452744	tyrosine/DOPA decarboxylase 2	-	9e-1	At2g04630	NRPB6B	S.X.	H.G.	Please select
0.71	88.2	Zm.4869.2.S1_at	AI603770	hypothetical protein LOC100274701	-	1e-20	At3g07050	GTP-binding family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.7144.1.A1_at	CD437816	chalcone isomerase 3	-	2e+0	At1g73260	trypsin and protease inhibitor family protein / Kunitz family protein	S.X.	H.G.	Please select
0.56	74.4	Zm.7091.1.A1_x_at	U23190.1	chlorophyll a/b-binding apoprotein CP24 precursor	-	3e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	S.X.	H.G.	Please select
0.56	74.4	Zm.7240.1.S1_at	BI430972	-	-	1e-18	At5g61450	2-phosphoglycerate kinase-related	S.X.	H.G.	Please select
0.42	51.3	Zm.4863.1.S1_at	AW600383	-	-	2e-1	At2g38465	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.7090.1.S1_at	AY105718.1	hypothetical protein LOC100191899	-	6e+0	At5g01740	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.8	99.4	GSM253261	ZM_2d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
20.8	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.8	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM253259	ZM_2d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
10.2	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-2	40	Zm.8426.1.A1_at	BM347536	hypothetical protein LOC100216659	-	8e-1	At1g71691	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.719.2.S1_a_at	BG320289	thioredoxin M1	-	4e-1	At1g11684	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.719.2.S1_x_at	BG320289	thioredoxin M1	-	4e-1	At1g11684	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.719.2.S1_at	BG320289	thioredoxin M1	-	4e-1	At1g11684	unknown protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.6870.1.A1_at	BM379176	dihydroflavonol-4-reductase	-	2e-11	At4g16430	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.6356.1.A1_at	BM332624	trafficking protein particle complex subunit 4	-	1e-5	At5g02280	synbindin, putative	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.6454.1.A1_at	AY106137.1	PP1/PP2A phosphatases pleiotropic regulator PRL1	-	9e-29	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.6198.1.A1_at	CK370554	hypothetical protein LOC100277123	-	2e+0	At2g37860	LCD1 (LOWER CELL DENSITY 1)	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.5787.1.A1_at	AI714879	-	-	1e-5	At2g17390	AKR2B (ANKYRIN REPEAT-CONTAINING 2B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-1	36	Arabidopsis thaliana	At2g04630	815006	NRPB6B	One of two highly similar proteins that can serve as a non-catalytic subunit of nuclear DNA-dependent RNA polymerases II and V; homologous to budding yeast RPB6 and the E. coli RNA polymerase omega subunit. Probably redundant with At5g51940.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-2	40	Glycine max	GmaAffx.51654.1.S1_at	AW185244	-	-	6e-7	At3g46290	protein kinase, putative	C.G.	S.X.	Please select
0.47	5e-158	557	Hordeum vulgare	Contig13210_at	Contig13210	-	-	9e+0	At5g57170	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please select
0.57	6e-133	476	Oryza sativa	Os01g0770200	AK065830.1	-	Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5)(Fragment)	1e+0	At5g18090	transcriptional factor B3 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.218737.1.S1_at	pmrna34460	hypothetical protein	-	3e+0	At3g44380	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	9e-66	252	Triticum aestivum	TaAffx.64767.1.S1_at	BJ277170	-	-	4e+0	At2g24590	splicing factor, putative	C.G.	S.X.	Please select
0.01	2e+1	30	Vitis vinifera	1622407_at	CF518919	hypothetical protein LOC100254632	-	3e-4	At3g10020	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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