Gene omics information

Query gene ID	Zm.1322.1.A1_at
Gene name	hypothetical protein LOC100279212
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.1322.1.A1_at	AI737263	hypothetical protein LOC100279212	-	5e-31	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	S.X.	H.G.	Please select
0.59	76.1	Zm.12634.3.A1_a_at	AI891366	-	-	4e+0	At4g16830	nuclear RNA-binding protein (RGGA)	S.X.	H.G.	Please select
0.55	71.6	Zm.4977.1.S1_at	AY109232.1	-	-	2e-1	At1g58360	AAP1 (AMINO ACID PERMEASE 1)	S.X.	H.G.	Please select
0.53	69.1		-	-	-	0			S.X.	H.G.	Please select
0.50	65.7	Zm.2758.1.A1_at	AW067110	-	-	2e-6	At2g25730	unknown protein	S.X.	H.G.	Please select
0.48	61.3	Zm.16861.2.S1_at	AW498347	L-ascorbate oxidase	-	7e-4	At1g55570	sks12 (SKU5 Similar 12)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.0	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.0	97.7	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.1	97.4	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.6	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.2	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	Zm.327.1.S1_at	AB042270.1	histidine kinase 1	-	3e-14	At2g01830	WOL (WOODEN LEG)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.19155.1.S1_at	CA401905	calcium-dependent protein kinase, isoform 2	-	9e-29	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.17093.1.S1_at	CO523236	hypothetical protein LOC100193332	-	5e-2	At2g27260	-	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.4539.1.S1_at	AY108790.1	protein kinase G11A	-	2e-25	At2g44830	protein kinase, putative	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.14285.1.S1_at	BM266353	hypothetical protein LOC100277939	-	2e-1	At5g40340	PWWP domain-containing protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.1361.1.A1_at	BM073484	hypothetical protein AY105746	-	2e-1	At5g62750	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	ZmAffx.871.1.A1_at	AI770769	-	-	8e-1	At1g69760	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	ZmAffx.871.1.S1_at	AI770769	hypothetical protein LOC100273239	-	8e-1	At1g69760	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.842.1.A1_at	BM337077	hypothetical protein LOC100273345	-	8e-3	At5g38910	germin-like protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	5e-31	137	Arabidopsis thaliana	At3g02760	820930	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	2e-12	75	Glycine max	GmaAffx.75546.1.S1_at	AW132919	-	-	1e-49	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select
0.25	7e-47	188	Hordeum vulgare	Contig17394_at	Contig17394	-	-	5e-4	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select
0.63	2e-136	488	Oryza sativa	Os05g0150900	AK099789.1	-	-	3e-32	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	1e-19	99	Populus trichocarpa	PtpAffx.212320.1.S1_at	pmrna24151	hypothetical protein	-	3e-114	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.49	2e-98	361	Triticum aestivum	Ta.3722.1.S1_at	BJ273362	histidyl-tRNA synthetase	-	7e-23	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select
0.02	4e-4	46	Vitis vinifera	1610877_at	CF517648	hypothetical protein LOC100241489	-	5e-10	At3g02760	ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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