Gene omics information

Query gene ID	Zm.13198.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	61.3	Zm.13198.2.A1_at	CA400950	-	-	4e+0	At3g43432	unknown protein	S.X.	H.G.	Please select
0.88	96.7	Zm.9561.1.A1_at	AW433482	calmodulin binding protein	-	7e-7	At5g57580	calmodulin-binding protein	S.X.	H.G.	Please select
0.67	85.8	Zm.4160.1.A1_at	CF243936	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	S.X.	H.G.	Please select
0.57	75.1	Zm.17629.1.A1_at	CD435755	-	-	2e-6	At5g64550	loricrin-related	S.X.	H.G.	Please select
0.55	71.6	Zm.17630.1.A1_at	CK348094	-	-	4e-1	At1g06760	histone H1, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.2563.1.A1_at	BE638571	-	-	7e-3	At4g22440	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.11837.1.A1_at	BM381140	hypothetical protein LOC100275424	-	1e+0	At4g16380	metal ion binding	S.X.	H.G.	Please select
0.38	44.2	Zm.9097.1.A1_at	BM266610	-	-	1e+0	At2g17640	ATSERAT3	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.6	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	3874	Zm.13198.2.A1_a_at	CA400950	-	-	4e+0	At3g43432	unknown protein	C.G.	S.X.	Please select
0.50	0	1094	Zm.13198.1.A1_x_at	CA403514	-	-	1e-1	At3g52270	ATP binding / RNA polymerase II transcription factor	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17195.1.S1_at	CK144512	-	-	1e+1	At5g45680	FK506-binding protein 1 (FKBP13)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.13322.1.A1_at	BM895136	-	-	1e+0	At1g52855	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.12316.1.S1_at	CO533661	USP family protein	-	5e-2	At1g62820	calmodulin, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.10557.1.A1_a_at	CK347884	hypothetical protein LOC100280344 /// agmatine deiminase	-	6e-6	At5g08170	EMB1873 (EMBRYO DEFECTIVE 1873)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.10557.1.A1_x_at	CK347884	agmatine deiminase	-	6e-6	At5g08170	EMB1873 (EMBRYO DEFECTIVE 1873)	C.G.	S.X.	Please select
0.01	7e+0	32	Zm.7081.1.S1_x_at	BM078729	hypothetical protein LOC100193634 /// ribosomal protein L32 homolog32	-	7e-26	At2g36620	RPL24A (ribosomal protein L24)	C.G.	S.X.	Please select
0.01	7e+0	32	Zm.7081.1.S1_at	BM078729	Hypothetical protein LOC100193634	-	7e-26	At2g36620	RPL24A (ribosomal protein L24)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e+0	34	Arabidopsis thaliana	At3g43432	6241348	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e+0	36	Glycine max	HgAffx.4445.1.S1_at	CD748979	-	-	1e+1	At5g11480	GTP binding	C.G.	S.X.	Please select
0.45	1e-69	264	Hordeum vulgare	Contig11521_at	Contig11521	-	-	3e+0	At2g34440	AGL29 (AGAMOUS-LIKE 29)	C.G.	S.X.	Please select
0.49	6e-56	220	Oryza sativa	Os06g0499000	AU101086	-	Hypothetical protein	1e+0	At2g34440	AGL29 (AGAMOUS-LIKE 29)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e-4	48	Populus trichocarpa	Ptp.68.3.S1_at	CV262974	-	-	2e-27	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e-1	38	Triticum aestivum	TaAffx.97931.1.S1_at	BQ801647	-	-	4e-1	At1g07950	surfeit locus protein 5 family protein / SURF5 family protein	C.G.	S.X.	Please select
0.02	8e-5	48	Vitis vinifera	1615544_at	CB971491	-	-	3e-17	At1g56700	pyrrolidone-carboxylate peptidase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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