Gene omics information

Query gene ID	Zm.13196.1.S1_at
Gene name	t-snare
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.13196.1.S1_at	AY105985.1	t-snare	-	6e-2	At5g59210	myosin heavy chain-related	S.X.	H.G.	Please select
0.73	89.9	Zm.18109.1.S1_at	AI881274	-	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.5115.1.A1_at	AI600917	hypothetical protein LOC100272658	-	2e-46	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.16025.2.A1_at	CF630160	-	-	4e+0	At5g42700	transcriptional factor B3 family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	S.X.	H.G.	Please select
0.16	9.4	Zm.15891.2.A1_at	BM267660	60S ribosomal protein L13-2	-	7e-31	At5g23900	60S ribosomal protein L13 (RPL13D)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	97.7	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.7	97.6	GSM206329	Right pulvinus control polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.0	97.3	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.8	97.2	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.5	97.1	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.4	97.0	GSM206327	Upper pulvinus 30 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.0	96.7	GSM206328	Upper pulvinus 60 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.0	96.7	GSM206315	Upper pulvinus 30 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.29	9e-73	274	Zm.17309.1.A1_s_at	CK369677	t-snare	-	4e+0	At5g64680	unknown protein	C.G.	S.X.	Please select
0.29	9e-73	274	Zm.17309.1.A1_at	CK369677	-	-	4e+0	At5g64680	unknown protein	C.G.	S.X.	Please select
0.22	3e-57	222	ZmAffx.33.1.A1_at	AI657429	t-snare	-	2e-1	At4g00890	proline-rich family protein	C.G.	S.X.	Please select
0.12	3e-57	222	ZmAffx.33.1.S1_at	AI657429	-	-	2e-1	At4g00890	proline-rich family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.7818.1.A1_at	CO532783	hypothetical protein LOC100272362	-	2e+1	Atmg01030	-	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.9562.1.S1_at	D88452.1	aldehyde oxidase-2	-	4e-5	At5g20960	AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.40.1.S1_at	BM078677	-	-	9e-5	At3g43600	AAO2 (ALDEHYDE OXIDASE 2)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.8896.1.S1_at	AY104827.1	protein UNQ2508/PRO5996	-	8e-1	At4g21190	emb1417 (embryo defective 1417)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.617.1.A1_at	AF326505.1	tonoplast membrane integral protein ZmTIP4-1	-	4e-2	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-2	40	Arabidopsis thaliana	At5g59210	836039	myosin heavy chain-related	F:unknown;P:biological_process unknown;C:unknown;MOBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-3	44	Glycine max	GmaAffx.87278.1.S1_at	T41479	-	-	2e-11	At5g59210	myosin heavy chain-related	C.G.	S.X.	Please select
0.57	2e-135	482	Hordeum vulgare	Contig12377_at	Contig12377	-	-	2e-1	At5g59210	myosin heavy chain-related	C.G.	S.X.	Please select
0.48	4e-72	274	Oryza sativa	Os03g0268100	AK065357.1	-	Conserved hypothetical protein	6e-2	At5g59210	myosin heavy chain-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	1e-12	75	Populus trichocarpa	PtpAffx.200764.1.S1_s_at	pmrna1480	hypothetical protein	-	1e-36	At5g59210	myosin heavy chain-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.55	4e-117	422	Triticum aestivum	Ta.6516.1.S1_at	CD888604	-	-	1e-2	At5g59210	myosin heavy chain-related	C.G.	S.X.	Please select
0.02	7e-2	38	Vitis vinifera	1615036_at	BQ800300	hypothetical protein LOC100255810	-	1e+0	At5g66380	ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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