Gene omics information

Query gene ID	Zm.13185.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.13185.1.A1_at	AY104045.1	-	-	1e-22	At3g13060	-	S.X.	H.G.	Please select
0.61	79.5	Zm.9311.1.A1_a_at	BG842505	hypothetical protein LOC100274965	-	5e+0	At2g29180	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.11636.1.A1_at	BM379473	-	-	4e+0	At5g07160	DNA binding / transcription factor	S.X.	H.G.	Please select
0.60	77.8	Zm.7671.1.A1_at	BM073122	hypothetical protein LOC100272470	-	8e-2	At4g00232	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.7541.1.A1_at	BM341407	hypothetical protein LOC100192095	-	6e+0	At3g43110	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.7938.1.A1_at	BM079591	glycosyltransferase	-	7e+0	At5g42567	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	96.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.1	95.9	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.8	95.5	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.6	95.2	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.6	95.2	GSM205423	B73xMo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM205422	Mo17xB73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-8	59	Zm.17112.1.A1_at	CA401004	hypothetical protein LOC100191952	-	8e-14	At5g61020	ECT3	C.G.	S.X.	Please select
0.02	1e-7	57	Zm.3699.3.S1_at	AI649477	hypothetical protein LOC100273816	-	4e-10	At3g13460	ECT2	C.G.	S.X.	Please select
0.04	2e-6	54	Zm.5103.1.A1_at	AI600852	-	-	3e-15	At3g13460	ECT2	C.G.	S.X.	Please select
0.02	5e-1	36	Zm.7020.1.A1_at	CA402867	-	-	1e-13	At1g55500	ECT4	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.9642.1.A1_at	BM338826	-	-	3e-1	At2g17940	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.198.2.A1_at	CD438193	-	-	6e-1	At3g13686	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.198.2.S1_at	CD438193	GLA1	-	6e-1	At3g13686	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.19155.2.A1_x_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.19155.2.A1_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-22	109	Arabidopsis thaliana	At3g13060	820492	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	3e-2	42	Glycine max	Gma.6053.1.S1_at	CA852593	-	-	1e-23	At3g17330	ECT6 (evolutionarily conserved C-terminal region 6)	C.G.	S.X.	Please select
0.14	9e-37	155	Hordeum vulgare	Contig12653_at	Contig12653	-	-	6e-3	At3g13460	ECT2	C.G.	S.X.	Please select
0.55	0	1005	Oryza sativa	Os08g0224200	AK101331.1	-	YTH domain protein 2 (High-glucose-regulatedprotein 8) (NY-REN-2 antigen) (CLL-associated antigenKW-14). Splice isoform 2	1e-21	At3g13060	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-1	40	Populus trichocarpa	PtpAffx.217256.1.S1_at	pmrna32445	hypothetical protein	-	4e-30	At5g58190	ECT10	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	3e-112	406	Triticum aestivum	TaAffx.9773.1.S1_s_at	CA605406	-	-	3e-9	At1g79270	ECT8 (evolutionarily conserved C-terminal region 8)	C.G.	S.X.	Please select
0.06	2e-8	59	Vitis vinifera	1619829_at	CB003964	-	-	1e-29	At1g48110	ECT7 (evolutionarily conserved C-terminal region 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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