Gene omics information

Query gene ID	Zm.13026.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.90	97.0	Zm.13026.1.S1_at	AY111398.1	-	-	3e-1	At4g28930	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.3418.1.A1_at	CF624427	-	-	2e+0	At4g33465	SCRL22 (SCR-Like 22)	S.X.	H.G.	Please select
0.44	55.7	Zm.8945.1.S1_at	AY103889.1	-	-	2e-85	At5g18580	FASS (FASS 1)	S.X.	H.G.	Please select
0.42	51.3	Zm.6681.1.A1_at	BG837073	wound induced protein	-	3e-1	At4g28240	wound-responsive protein-related	S.X.	H.G.	Please select
0.40	48.5	Zm.890.2.A1_a_at	CA400673	GSDL-motif lipase	-	5e+0	At5g55710	-	S.X.	H.G.	Please select
0.35	38.9	Zm.5950.1.A1_at	BG837473	hypothetical protein LOC100216987	-	9e-3	At3g56480	myosin heavy chain-related	S.X.	H.G.	Please select
0.35	38.9	Zm.5571.2.A1_a_at	AY107402.1	hypothetical protein LOC100194279	-	2e+0	At3g11530	vacuolar protein sorting 55 family protein / VPS55 family protein	S.X.	H.G.	Please select
0.34	37.2	Zm.9039.1.A1_at	BM078424	hypothetical protein LOC100193374	-	5e-1	At1g55310	SR33	S.X.	H.G.	Please select
0.33	36.0	Zm.7147.1.A1_at	AY105550.1	-	-	3e+0	At1g48750	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.17930.1.A1_at	CK347990	pollen-specific protein like	-	6e+0	At3g57230	AGL16 (AGAMOUS-LIKE 16)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.9	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.5	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.4	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	835	Zm.13026.1.A1_a_at	AY111398.1	-	-	3e-1	At4g28930	unknown protein	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.13307.1.S1_at	CA827415	-	-	1e+0	At1g10200	WLIM1	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.18144.1.S1_at	CF045756	prolyl 4-hydroxylase alpha-2 subunit	-	9e-22	At1g20270	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.19208.1.A1_at	CO525556	-	-	1e+0	At1g04930	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18445.1.S1_at	CO519931	peptide methionine sulfoxide reductase msrB	-	9e-12	At1g53670	MSRB1 (methionine sulfoxide reductase B 1)	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.894.1.S1_at	CA400021	DCN1-like protein 2	-	3e-3	At3g12760	-	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.8873.1.A1_at	BM339271	-	-	5e+0	At4g35165	unknown protein	C.G.	S.X.	Please select
0.02	8e+0	30	Zm.8376.1.S1_at	BM073880	hypothetical protein LOC100280303	-	4e-1	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select
0.01	8e+0	30	Zm.4043.1.S1_at	AW091252	-	-	3e-10	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At4g28930	829014	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	Gma.14930.1.A1_at	BG155231	-	-	9e-1	At4g28160	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.03	9e+0	30	Hordeum vulgare	HB04I18r_at	HB04I18r	-	-	2e+0	At1g66770	nodulin MtN3 family protein	C.G.	S.X.	Please select
0.02	9e+0	32	Oryza sativa	Os02g0667000	AK058849.1	-	Complex 1 LYR protein family protein	6e+0	At2g22750	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.208018.1.S1_at	pmrna15922	hypothetical protein	-	4e+0	At3g06730	thioredoxin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+0	34	Triticum aestivum	TaAffx.7497.1.S1_at	CA657776	-	-	8e+0	At5g20130	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1619986_s_at	CD800813	hypothetical protein LOC100268157	-	2e-5	At3g16520	UDP-glucoronosyl/UDP-glucosyl transferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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