Gene omics information

Query gene ID	Zm.12977.2.S1_at
Gene name	Hypothetical protein LOC100193319
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	S.X.	H.G.	Please select
0.57	75.1	Zm.17605.1.S1_at	CK368440	-	-	4e-1	At1g03457	RNA-binding protein, putative	S.X.	H.G.	Please select
0.55	71.6	Zm.6468.1.A1_at	AI692046	hypothetical protein LOC100277167	-	1e-3	At1g14440	AtHB31 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 31)	S.X.	H.G.	Please select
0.53	69.1	Zm.2986.1.A1_at	AF056326.1	low phytic acid1	-	4e-105	At4g39800	MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.12511.1.S1_at	AW062063	hypothetical protein LOC100276976	-	5e+0	At5g53110	-	S.X.	H.G.	Please select
0.33	36.0	Zm.678.1.S1_at	AF302187.1	sucrose export defective1	-	4e-15	At4g32770	VTE1 (VITAMIN E DEFICIENT 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.0	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.0	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.7	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.7	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	664	Zm.12977.1.S1_a_at	AY105605.1	hypothetical protein LOC100193319	-	1e-4	At1g15370	-	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.15086.1.S1_at	AB040668.2	nonclathrin coat protein zeta1-COP	-	5e-18	At3g53730	histone H4	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.15086.1.S2_at	CF037152	Histone H4	-	5e-18	At3g53730	histone H4	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.9902.1.S1_at	AY108609.1	mitochondrial-processing peptidase alpha subunit	-	3e-1	At3g16480	MPPalpha (mitochondrial processing peptidase alpha subunit)	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.5397.1.A1_at	AI621755	-	-	3e+0	At5g37055	SEF (SERRATED LEAVES AND EARLY FLOWERING)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.4202.1.A1_at	CB350777	-	-	6e-3	At3g25577	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.2508.1.A1_at	CD447996	hypothetical protein LOC100280213	-	6e-2	At5g06260	nucleolar protein-related	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.18098.1.A1_at	CK347304	-	-	7e-6	At5g24110	WRKY30	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.14486.1.A1_at	AI964508	chlorophyll a-b binding protein 6A	-	6e-7	At3g54890	LHCA1	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	5e-5	48	Arabidopsis thaliana	At1g15370	838106	-	F:molecular_function unknown;P:transport;C:unknown;POF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.89701.1.A1_s_at	CK606722	-	-	7e-11	At1g15370	-	C.G.	S.X.	Please select
0.10	1e-7	56	Hordeum vulgare	HVSMEk0016J20r2_at	HVSMEk0016J20r2	-	-	5e-2	At1g15370	-	C.G.	S.X.	Please select
0.25	2e-43	176	Oryza sativa	Os03g0856200	AK070146.1	-	Ku domain containing protein	1e-1	At1g48050	KU80	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	8e-17	87	Populus trichocarpa	Ptp.6372.1.S1_at	CV246563	hypothetical protein	-	1e-59	At1g15370	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	5e-39	161	Triticum aestivum	Ta.14525.1.S1_at	BJ253272	-	-	4e-1	At2g36550	-	C.G.	S.X.	Please select
0.12	6e-11	65	Vitis vinifera	1615607_at	CB982604	-	-	3e-36	At1g15370	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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