Gene omics information

Query gene ID	Zm.12953.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.12953.1.A1_at	CD444066	-	-	4e+0	At5g25570	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.1546.2.S1_a_at	CB411210	hypothetical protein LOC100278775	-	3e-4	At1g15270	-	S.X.	H.G.	Please select
0.78	92.5	Zm.19031.1.A1_at	BU051425	-	-	2e-5	At2g01730	ATCPSF73-II (cleavage and polyadenylation specificity factor 73 kDa subunit-II)	S.X.	H.G.	Please select
0.77	92.1	Zm.10226.1.A1_at	BM332464	-	-	4e+0	At2g13720	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	S.X.	H.G.	Please select
0.75	90.8	Zm.19030.1.A1_at	AW179359	hypothetical protein LOC100279586	-	1e-1	At1g63855	unknown protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.47.1.A1_at	AI664954	hypothetical protein LOC100193281	-	8e-1	At2g37030	auxin-responsive family protein	S.X.	H.G.	Please select
0.70	87.0	Zm.15590.1.A1_at	CD448259	hypothetical protein LOC100277246	-	1e+0	At1g48730	unknown protein	S.X.	H.G.	Please select
0.68	86.1	Zm.13306.1.A1_at	BQ048230	DNA-damage-repair/toleration protein DRT102	-	6e-1	At5g10625	-	S.X.	H.G.	Please select
0.68	86.1	ZmAffx.459.1.A1_at	AI677212	-	-	8e-1	At1g26910	60S ribosomal protein L10 (RPL10B)	S.X.	H.G.	Please select
0.61	79.5	Zm.2925.2.S1_at	BG836389	-	-	4e-63	At2g47110	UBQ6	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.2	99.6	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM205421	B73 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.5	97.8	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.0	97.3	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	852	Zm.12953.1.A1_x_at	CD444066	-	-	4e+0	At5g25570	unknown protein	C.G.	S.X.	Please select
0.32	7e-154	541	Zm.30.4.S1_at	CD441407	-	-	1e+0	At3g52720	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	C.G.	S.X.	Please select
0.50	7e-86	315	ZmAffx.982.3.S1_at	AI668278	-	-	3e+0	At5g25570	unknown protein	C.G.	S.X.	Please select
0.50	7e-86	315	ZmAffx.982.3.A1_s_at	AI668278	-	-	3e+0	At5g25570	unknown protein	C.G.	S.X.	Please select
0.21	7e-77	286	Zm.30.1.S1_a_at	AF371264.1	15kD beta zein /// prolamin PPROL 17 /// 15 kDa zein protein	-	2e-1	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.45	1e-62	238	Zm.2961.3.S1_at	AW119963	-	-	2e+0	At5g25570	unknown protein	C.G.	S.X.	Please select
0.12	4e-26	117	Zm.3851.4.A1_at	CD441077	-	-	1e+0	At5g12470	unknown protein	C.G.	S.X.	Please select
0.17	5e-13	73	Zm.3851.3.A1_a_at	CA399586	-	-	5e+0	At1g20340	DRT112	C.G.	S.X.	Please select
0.17	5e-13	73	Zm.3851.3.A1_x_at	CA399586	-	-	5e+0	At1g20340	DRT112	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At5g25570	832632	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	GmaAffx.44808.1.A1_at	BE820724	-	-	3e+0	At1g76520	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	HVSMEh0089A15r2_at	HVSMEh0089A15r2	-	-	1e+0	At3g14670	unknown protein	C.G.	S.X.	Please select
0.04	7e+0	32	Oryza sativa	OsAffx.11193.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e+0	32	Populus trichocarpa	PtpAffx.225652.1.S1_x_at	pmrna45144	tir-nbs-lrr resistance protein /// tir-nbs-lrr resistance protein /// NBS resistance protein /// tir-nbs-lrr resistance protein /// tir-nbs-lrr resistance protein /// nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein /// tir-nbs-lrr resistance protein /// hypothetical protein /// hypothetical protein /// NBS resistance protein /// hypothetical protein /// hypothetical protein	-	3e-4	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	7e-48	190	Triticum aestivum	Ta.17137.1.S1_at	CA618105	-	-	7e-1	At5g60360	AALP (Arabidopsis aleurain-like protease)	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1622150_at	CK138131.1	-	-	1e-37	At1g27400	60S ribosomal protein L17 (RPL17A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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