CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.12936.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 79.5 Zm.12936.1.A1_at AY108987.1 - - 7e-1 At3g21338 unknown protein S.X. H.G.
0.60 77.8 Zm.2768.1.A1_at AW067159 Hypothetical protein LOC100193535 - 1e+0 At5g04760 myb family transcription factor S.X. H.G.
0.57 75.1 Zm.12977.2.S1_at AI677017 Hypothetical protein LOC100193319 - 5e-5 At1g15370 - S.X. H.G.
0.53 69.1 Zm.12511.1.S1_at AW062063 hypothetical protein LOC100276976 - 5e+0 At5g53110 - S.X. H.G.
0.46 58.4 Zm.678.1.S1_at AF302187.1 sucrose export defective1 - 4e-15 At4g32770 VTE1 (VITAMIN E DEFICIENT 1) S.X. H.G.
0.38 44.2 Zm.15790.1.S1_at AY109814.1 SWIb domain-containing protein - 1e-1 At4g26810 SWIB complex BAF60b domain-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 96.6 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.0 95.8 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.7 95.4 GSM202290 Mo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.3 94.7 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM206330 Lower pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.9 93.8 GSM206324 Upper pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.8 93.5 GSM162265 Wild type 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.8 93.5 GSM206327 Upper pulvinus 30 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.7 93.2 GSM206332 Lower pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.6 92.9 GSM202314 Mo17 19 day after pollination embryo tissue, biological replicate 2 GSE8179 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e-9 63 Zm.4699.1.S1_at CK787284 hypothetical protein LOC100273144 - 3e+0 At5g63480 unknown protein C.G. S.X.
0.03 3e-7 56 Zm.6913.2.A1_a_at AI065646 - - 9e-1 At2g16060 AHB1 (ARABIDOPSIS HEMOGLOBIN 1) C.G. S.X.
0.03 3e-7 56 Zm.6078.1.S1_at CF628917 hypothetical protein LOC100277511 - 2e+0 At1g51090 heavy-metal-associated domain-containing protein C.G. S.X.
0.02 3e-7 56 Zm.12227.1.S1_at AY104350.1 heat shock cognate 70 kDa protein 2 - 2e-53 At3g09440 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) C.G. S.X.
0.03 3e-7 56 Zm.12295.2.S1_a_at CD441109 stress responsive protein - 2e-2 At2g39050 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.02 1e-6 54 Zm.8336.1.S2_at AB061270.1 NAS1 protein - 4e+0 At2g44360 unknown protein C.G. S.X.
0.02 1e-6 54 Zm.8336.1.S1_at AB061270.1 NAS1 protein - 4e+0 At2g44360 unknown protein C.G. S.X.
0.02 1e-6 54 Zm.8336.1.S1_x_at AB061270.1 NAS1 protein - 4e+0 At2g44360 unknown protein C.G. S.X.
0.02 5e-6 52 Zm.3374.1.S1_at BM380917 - - 3e+0 At1g21864 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 7e-1 36 Arabidopsis thaliana At3g21338 6241382 unknown protein F:unknown;P:unknown;C:unknown - - - C.G. S.X.
0.03 4e-6 54 Glycine max GmaAffx.12286.2.S1_at BM108265 - - 1e-11 At5g38510 rhomboid family protein C.G. S.X.
0.07 2e-15 83 Hordeum vulgare Contig7258_at Contig7258 - - 5e+0 At5g46030 unknown protein C.G. S.X.
0.07 4e-10 67 Oryza sativa OsAffx.18174.1.S1_at - - - 0 C.G. S.X.
0.03 2e-5 52 Populus trichocarpa PtpAffx.16419.1.S1_at CX654747 hypothetical protein - 3e-1 At3g25640 unknown protein C.G. S.X.
0.05 2e-13 77 Triticum aestivum Ta.2803.1.S1_at BJ322551 - - 1e+0 At5g46030 unknown protein C.G. S.X.
0.03 2e-7 56 Vitis vinifera 1614133_at CD711415 hypothetical protein LOC100255873 - 5e-2 At1g43800 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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